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LAMA5 laminin subunit alpha 5 [ Aythya fuligula (tufted duck) ]

Gene ID: 116495821, updated on 25-Jun-2024

Summary

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Gene symbol
LAMA5
Gene description
laminin subunit alpha 5
See related
EnsemblRapid:ENSAFUG00000009155
Gene type
protein coding
RefSeq status
MODEL
Organism
Aythya fuligula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
Orthologs
human mouse all
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Genomic context

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See LAMA5 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
80
Annotation release Status Assembly Chr Location
100 current bAytFul2.pri (GCF_009819795.1) 16 NC_045574.1 (12658874..12742655, complement)

Chromosome 16 - NC_045574.1Genomic Context describing neighboring genes Neighboring gene oxysterol binding protein like 2 Neighboring gene ADRM1 26S proteasome ubiquitin receptor Neighboring gene Cdk5 and Abl enzyme substrate 2 Neighboring gene ribosomal protein S21

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045574.1 Chromosome 16 Reference bAytFul2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAytFul2.pri Primary Assembly

Genomic

  1. NC_045574.1 Reference bAytFul2.pri Primary Assembly

    Range
    12658874..12742655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032198536.1 → XP_032054427.1  laminin subunit alpha-5

    UniProtKB/TrEMBL
    A0A6J3DXP1
    Related
    ENSAFUP00000012599.1, ENSAFUT00000015298.1
    Conserved Domains (10) summary
    smart00180
    Location:2073 → 2117
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:3547 → 3677
    LamG; Laminin G domain
    cd00055
    Location:684 → 726
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3347 → 3500
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR02168
    Location:2311 → 2625
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam06008
    Location:2193 → 2451
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2648 → 2762
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1695 → 1831
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1583 → 1631
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:53 → 305
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
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