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RELN reelin [ Aythya fuligula (tufted duck) ]

Gene ID: 116491986, updated on 25-Jun-2024

Summary

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Gene symbol
RELN
Gene description
reelin
See related
EnsemblRapid:ENSAFUG00000016501
Gene type
protein coding
RefSeq status
MODEL
Organism
Aythya fuligula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
Orthologs
human mouse all
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Genomic context

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See RELN in Genome Data Viewer
Location:
chromosome: 1
Exon count:
65
Annotation release Status Assembly Chr Location
100 current bAytFul2.pri (GCF_009819795.1) 1 NC_045559.1 (13385746..13672362, complement)

Chromosome 1 - NC_045559.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 26 member 5 Neighboring gene proteasome 26S subunit, ATPase 2 Neighboring gene origin recognition complex subunit 5 Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045559.1 Chromosome 1 Reference bAytFul2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipoprotein particle receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron migration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reelin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAytFul2.pri Primary Assembly

Genomic

  1. NC_045559.1 Reference bAytFul2.pri Primary Assembly

    Range
    13385746..13672362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032192390.1 → XP_032048281.1  reelin isoform X1

    UniProtKB/TrEMBL
    A0A6J3DA22
    Related
    ENSAFUP00000022108.1, ENSAFUT00000027843.1
    Conserved Domains (21) summary
    cd10036
    Location:205 → 354
    Reelin_subrepeat_Nt; Additional N-terminal subrepeat of reelin
    cd10037
    Location:529 → 674
    Reelin_repeat_1_subrepeat_1; N-terminal subrepeat of tandem repeat unit 1 of reelin and related proteins
    cd10038
    Location:870 → 1037
    Reelin_repeat_2_subrepeat_1; N-terminal subrepeat of tandem repeat unit 2 of reelin and related proteins
    cd10039
    Location:1243 → 1413
    Reelin_repeat_3_subrepeat_1; N-terminal subrepeat of tandem repeat unit 3 of reelin and related proteins
    cd10040
    Location:1609 → 1778
    Reelin_repeat_4_subrepeat_1; N-terminal subrepeat of tandem repeat unit 4 of reelin and related proteins
    cd10041
    Location:1960 → 2134
    Reelin_repeat_5_subrepeat_1; N-terminal subrepeat of tandem repeat unit 5 of reelin and related proteins
    cd10042
    Location:2326 → 2482
    Reelin_repeat_6_subrepeat_1; N-terminal subrepeat of tandem repeat unit 6 of reelin and related proteins
    cd10043
    Location:2673 → 2857
    Reelin_repeat_7_subrepeat_1; N-terminal subrepeat of tandem repeat unit 7 of reelin and related proteins
    cd10044
    Location:3059 → 3233
    Reelin_repeat_8_subrepeat_1; N-terminal subrepeat of tandem repeat unit 8 of reelin and related proteins
    cd10045
    Location:711 → 865
    Reelin_repeat_1_subrepeat_2; C-terminal subrepeat of tandem repeat unit 1 of reelin and related proteins
    cd10046
    Location:1068 → 1223
    Reelin_repeat_2_subrepeat_2; C-terminal subrepeat of tandem repeat unit 2 of reelin and related proteins
    cd10047
    Location:1451 → 1601
    Reelin_repeat_3_subrepeat_2; C-terminal subrepeat of tandem repeat unit 3 of reelin and related proteins
    cd10048
    Location:1804 → 1941
    Reelin_repeat_4_subrepeat_2; C-terminal subrepeat of tandem repeat unit 4 of reelin and related proteins
    cd10049
    Location:2169 → 2318
    Reelin_repeat_5_subrepeat_2; C-terminal subrepeat of tandem repeat unit 5 of reelin and related proteins
    cd10050
    Location:2518 → 2665
    Reelin_repeat_6_subrepeat_2; C-terminal subrepeat of tandem repeat unit 6 of reelin and related proteins
    cd10051
    Location:2893 → 3054
    Reelin_repeat_7_subrepeat_2; C-terminal subrepeat of tandem repeat unit 7 of reelin and related proteins
    cd10052
    Location:3270 → 3430
    Reelin_repeat_8_subrepeat_2; C-terminal subrepeat of tandem repeat unit 8 of reelin and related proteins
    cl15240
    Location:425 → 559
    Reelin_subrepeat_like; Tandem repeat subunit of reelin and related proteins
    cd08544
    Location:51 → 181
    Reeler; the N-terminal domain of reelin, F-spondin, and a variety of other proteins
    pfam18720
    Location:3235 → 3263
    EGF_Tenascin; Tenascin EGF domain
    pfam07974
    Location:2140 → 2163
    EGF_2; EGF-like domain

  2. XM_032192399.1 → XP_032048290.1  reelin isoform X2

    UniProtKB/TrEMBL
    A0A6J3DDQ8
    Conserved Domains (21) summary
    cd10036
    Location:205 → 354
    Reelin_subrepeat_Nt; Additional N-terminal subrepeat of reelin
    cd10037
    Location:529 → 674
    Reelin_repeat_1_subrepeat_1; N-terminal subrepeat of tandem repeat unit 1 of reelin and related proteins
    cd10038
    Location:870 → 1037
    Reelin_repeat_2_subrepeat_1; N-terminal subrepeat of tandem repeat unit 2 of reelin and related proteins
    cd10039
    Location:1243 → 1413
    Reelin_repeat_3_subrepeat_1; N-terminal subrepeat of tandem repeat unit 3 of reelin and related proteins
    cd10040
    Location:1609 → 1778
    Reelin_repeat_4_subrepeat_1; N-terminal subrepeat of tandem repeat unit 4 of reelin and related proteins
    cd10041
    Location:1960 → 2134
    Reelin_repeat_5_subrepeat_1; N-terminal subrepeat of tandem repeat unit 5 of reelin and related proteins
    cd10042
    Location:2326 → 2482
    Reelin_repeat_6_subrepeat_1; N-terminal subrepeat of tandem repeat unit 6 of reelin and related proteins
    cd10043
    Location:2673 → 2857
    Reelin_repeat_7_subrepeat_1; N-terminal subrepeat of tandem repeat unit 7 of reelin and related proteins
    cd10044
    Location:3059 → 3233
    Reelin_repeat_8_subrepeat_1; N-terminal subrepeat of tandem repeat unit 8 of reelin and related proteins
    cd10045
    Location:711 → 865
    Reelin_repeat_1_subrepeat_2; C-terminal subrepeat of tandem repeat unit 1 of reelin and related proteins
    cd10046
    Location:1068 → 1223
    Reelin_repeat_2_subrepeat_2; C-terminal subrepeat of tandem repeat unit 2 of reelin and related proteins
    cd10047
    Location:1451 → 1601
    Reelin_repeat_3_subrepeat_2; C-terminal subrepeat of tandem repeat unit 3 of reelin and related proteins
    cd10048
    Location:1804 → 1941
    Reelin_repeat_4_subrepeat_2; C-terminal subrepeat of tandem repeat unit 4 of reelin and related proteins
    cd10049
    Location:2169 → 2318
    Reelin_repeat_5_subrepeat_2; C-terminal subrepeat of tandem repeat unit 5 of reelin and related proteins
    cd10050
    Location:2518 → 2665
    Reelin_repeat_6_subrepeat_2; C-terminal subrepeat of tandem repeat unit 6 of reelin and related proteins
    cd10051
    Location:2893 → 3054
    Reelin_repeat_7_subrepeat_2; C-terminal subrepeat of tandem repeat unit 7 of reelin and related proteins
    cd10052
    Location:3270 → 3430
    Reelin_repeat_8_subrepeat_2; C-terminal subrepeat of tandem repeat unit 8 of reelin and related proteins
    cl15240
    Location:425 → 559
    Reelin_subrepeat_like; Tandem repeat subunit of reelin and related proteins
    cd08544
    Location:51 → 181
    Reeler; the N-terminal domain of reelin, F-spondin, and a variety of other proteins
    pfam18720
    Location:3235 → 3263
    EGF_Tenascin; Tenascin EGF domain
    pfam07974
    Location:2140 → 2163
    EGF_2; EGF-like domain
Nucleotide Protein
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