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LAMA1 laminin subunit alpha 1 [ Aythya fuligula (tufted duck) ]

Gene ID: 116485522, updated on 25-Jun-2024

Summary

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Gene symbol
LAMA1
Gene description
laminin subunit alpha 1
See related
EnsemblRapid:ENSAFUG00000008089
Gene type
protein coding
RefSeq status
MODEL
Organism
Aythya fuligula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
Orthologs
human mouse all
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Genomic context

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See LAMA1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
63
Annotation release Status Assembly Chr Location
100 current bAytFul2.pri (GCF_009819795.1) 2 NC_045560.1 (107209027..107314865)

Chromosome 2 - NC_045560.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type M Neighboring gene leucine rich repeat containing 30 Neighboring gene Rho GTPase activating protein 28 Neighboring gene transmembrane protein 200C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045560.1 Chromosome 2 Reference bAytFul2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAytFul2.pri Primary Assembly

Genomic

  1. NC_045560.1 Reference bAytFul2.pri Primary Assembly

    Range
    107209027..107314865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032180959.1 → XP_032036850.1  laminin subunit alpha-1

    UniProtKB/TrEMBL
    A0A6J3CEK1
    Related
    ENSAFUP00000011142.1, ENSAFUT00000013532.1
    Conserved Domains (11) summary
    smart00136
    Location:26 → 278
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:1371 → 1397
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2154 → 2293
    LamG; Laminin G domain
    COG1196
    Location:1709 → 2005
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:858 → 910
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2320 → 2476
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1585 → 1826
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2024 → 2158
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1228 → 1370
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:912 → 958
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2767 → 2895
    Laminin_G_1; Laminin G domain
Nucleotide Protein
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