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lama2 laminin, alpha 2 [ Sander lucioperca (pikeperch) ]

Gene ID: 116066091, updated on 21-Aug-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
See related
EnsemblRapid:ENSSLUG00000005605
Gene type
protein coding
RefSeq status
MODEL
Organism
Sander lucioperca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
75
Annotation release Status Assembly Chr Location
101 current SLUC_FBN_1.2 (GCF_008315115.2) 19 NC_050191.1 (10069398..10275322, complement)
100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022173056.1 (3528928..3734992, complement)

Chromosome 19 - NC_050191.1Genomic Context describing neighboring genes Neighboring gene signal-induced proliferation-associated 1 like 1 Neighboring gene regulator of G protein signaling 6 Neighboring gene uncharacterized LOC116066290 Neighboring gene vesicular inhibitory amino acid transporter-like Neighboring gene uncharacterized LOC118493895

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2
Names
laminin subunit alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLUC_FBN_1.2 Primary Assembly

Genomic

  1. NC_050191.1 Reference SLUC_FBN_1.2 Primary Assembly

    Range
    10069398..10275322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035995247.1 → XP_035851140.1  laminin subunit alpha-2 isoform X9

    UniProtKB/TrEMBL
    A0A8C9Y110
    Conserved Domains (11) summary
    smart00180
    Location:950 → 994
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2103 → 2245
    LamG; Laminin G domain
    COG1196
    Location:1706 → 2069
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2939 → 3090
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1534 → 1787
    Laminin_I; Laminin Domain I
    pfam06009
    Location:1987 → 2106
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1216 → 1354
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1402 → 1448
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2772 → 2899
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  2. XM_035995246.1 → XP_035851139.1  laminin subunit alpha-2 isoform X8

    UniProtKB/TrEMBL
    A0A8C9Y110
    Related
    ENSSLUP00000017408.2, ENSSLUT00000017971.2
    Conserved Domains (11) summary
    smart00180
    Location:950 → 994
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2149 → 2291
    LamG; Laminin G domain
    COG1196
    Location:1752 → 2115
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2985 → 3136
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1580 → 1833
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2033 → 2152
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1216 → 1354
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1402 → 1448
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2818 → 2945
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  3. XM_031321901.2 → XP_031177761.2  laminin subunit alpha-2 isoform X7

    UniProtKB/TrEMBL
    A0A8C9Y110
    Conserved Domains (11) summary
    smart00180
    Location:950 → 994
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2151 → 2293
    LamG; Laminin G domain
    COG1196
    Location:1752 → 2117
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2987 → 3138
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1580 → 1833
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2033 → 2154
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1216 → 1354
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1402 → 1448
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2820 → 2947
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  4. XM_035995245.1 → XP_035851138.1  laminin subunit alpha-2 isoform X6

    UniProtKB/TrEMBL
    A0A8C9Y110
    Conserved Domains (11) summary
    smart00180
    Location:950 → 994
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2151 → 2293
    LamG; Laminin G domain
    COG1196
    Location:1752 → 2117
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2991 → 3142
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1580 → 1833
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2033 → 2154
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1216 → 1354
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1402 → 1448
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2824 → 2951
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  5. XM_035995244.1 → XP_035851137.1  laminin subunit alpha-2 isoform X5

    UniProtKB/TrEMBL
    A0A8C9Y110
    Conserved Domains (11) summary
    smart00180
    Location:1041 → 1085
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2196 → 2338
    LamG; Laminin G domain
    COG1196
    Location:1797 → 2162
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3036 → 3187
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1625 → 1878
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2078 → 2199
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1307 → 1445
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1493 → 1539
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2869 → 2996
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  6. XM_035995241.1 → XP_035851134.1  laminin subunit alpha-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C9Y110
    Conserved Domains (11) summary
    smart00180
    Location:1041 → 1085
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2240 → 2382
    LamG; Laminin G domain
    COG1196
    Location:1843 → 2206
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3080 → 3231
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1671 → 1924
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2124 → 2243
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1307 → 1445
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1493 → 1539
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2913 → 3040
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  7. XM_035995242.1 → XP_035851135.1  laminin subunit alpha-2 isoform X3

    UniProtKB/TrEMBL
    A0A8C9Y110
    Conserved Domains (11) summary
    smart00180
    Location:1041 → 1085
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2242 → 2384
    LamG; Laminin G domain
    COG1196
    Location:1843 → 2208
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3078 → 3229
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1671 → 1924
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2124 → 2245
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1307 → 1445
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1493 → 1539
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2911 → 3038
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  8. XM_035995243.1 → XP_035851136.1  laminin subunit alpha-2 isoform X4

    UniProtKB/TrEMBL
    A0A8C9Y110
    Related
    ENSSLUP00000017535.2, ENSSLUT00000018101.2
    Conserved Domains (11) summary
    smart00180
    Location:1041 → 1085
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2242 → 2384
    LamG; Laminin G domain
    COG1196
    Location:1843 → 2208
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3053 → 3204
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1671 → 1924
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2124 → 2245
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1307 → 1445
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1493 → 1539
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2886 → 3013
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  9. XM_035995240.1 → XP_035851133.1  laminin subunit alpha-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C9Y110
    Conserved Domains (11) summary
    smart00180
    Location:1041 → 1085
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2242 → 2384
    LamG; Laminin G domain
    COG1196
    Location:1843 → 2208
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3082 → 3233
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1671 → 1924
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2124 → 2245
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1307 → 1445
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1493 → 1539
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2915 → 3042
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
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