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lama2 laminin, alpha 2 [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114849209, updated on 20-Aug-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
See related
EnsemblRapid:ENSBSLG00000010917
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
75
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 24 NC_040901.2 (11451278..11549871)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 24 NC_040901.1 (11565293..11663859)

Chromosome 24 - NC_040901.2Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene vesicular inhibitory amino acid transporter-like Neighboring gene uncharacterized LOC114849211 Neighboring gene regulator of G protein signaling 6 Neighboring gene signal-induced proliferation-associated 1 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2
Names
laminin subunit alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040901.2 Reference fBetSpl5.4 Primary Assembly

    Range
    11451278..11549871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029140389.3 → XP_028996222.1  laminin subunit alpha-2 isoform X1

    UniProtKB/TrEMBL
    A0A6P7LQF6
    Conserved Domains (10) summary
    smart00180
    Location:1041 → 1085
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    COG1196
    Location:1868 → 2206
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:900 → 944
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3078 → 3229
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06009
    Location:2124 → 2243
    Laminin_II; Laminin Domain II
    pfam06008
    Location:1671 → 1924
    Laminin_I; Laminin Domain I
    pfam00052
    Location:1307 → 1445
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1493 → 1539
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2913 → 3040
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:34 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  2. XM_055506142.1 → XP_055362117.1  laminin subunit alpha-2 isoform X3

    UniProtKB/TrEMBL
    A0A9W2XK72

  3. XM_055506141.1 → XP_055362116.1  laminin subunit alpha-2 isoform X2

    UniProtKB/TrEMBL
    A0A9W2XJJ0

  4. XM_055506144.1 → XP_055362119.1  laminin subunit alpha-2 isoform X5

    UniProtKB/TrEMBL
    A0A9W2XKB6
    Related
    ENSBSLP00000025428.3, ENSBSLT00000028357.3

  5. XM_055506145.1 → XP_055362120.1  laminin subunit alpha-2 isoform X6

    UniProtKB/TrEMBL
    A0A9W2XKI4
    Related
    ENSBSLP00000024416.3, ENSBSLT00000027276.3

  6. XM_055506143.1 → XP_055362118.1  laminin subunit alpha-2 isoform X4

    UniProtKB/TrEMBL
    A0A9W2XJS2
Nucleotide Protein
Heading Accession and Version

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