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SFTPC surfactant protein C [ Anas platyrhynchos (mallard) ]

Gene ID: 113839763, updated on 15-Mar-2024

Summary

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Gene symbol
SFTPC
Gene description
surfactant protein C
See related
EnsemblRapid:ENSAPLG00030019507
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See SFTPC in Genome Data Viewer
Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 23 NC_051794.1 (2006104..2020750)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 23 NC_040068.1 (387729..388992)

Chromosome 23 - NC_051794.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 18 Neighboring gene basic proline-rich protein-like Neighboring gene HR lysine demethylase and nuclear receptor corepressor Neighboring gene basic salivary proline-rich protein 1-like Neighboring gene receptor accessory protein 4 Neighboring gene leucine rich repeat LGI family member 3 Neighboring gene pulmonary surfactant-associated protein C-like Neighboring gene kunitz-type serine protease inhibitor bitisilin-3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in respiratory gaseous exchange by respiratory system IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in alveolar lamellar body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051794.1 Reference ZJU1.0 Primary Assembly

    Range
    2006104..2020750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038167059.1 → XP_038022987.1  pulmonary surfactant-associated protein C isoform X2

    UniProtKB/TrEMBL
    A0A8B9SRT9
    Conserved Domains (1) summary
    smart00019
    Location:17 → 145
    SF_P; Pulmonary surfactant proteins

  2. XM_027443680.2 → XP_027299481.2  pulmonary surfactant-associated protein C isoform X1

    UniProtKB/TrEMBL
    A0A8B9R518
    Related
    ENSAPLP00030032365.1, ENSAPLT00030050740.1
    Conserved Domains (1) summary
    smart00019
    Location:1 → 179
    SF_P; Pulmonary surfactant proteins
Nucleotide Protein
Heading Accession and Version

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