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Source database (GenBank or RefSeq) File type

IASCAAS_PekingDuck_PBH1.5

Organism name:

Anas platyrhynchos (mallard)

Isolate:

PK-2015

BioSample:

SAMN10245527

BioProject:

PRJNA496533

Submitter:

Institute of Animal Sciences (IAS), Chinese Academy of Agricultural Sciences (CAAS)

Date:

2018/11/29

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_003850225.1 (latest)

RefSeq assembly accession:

GCF_003850225.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

RHJV01

Assembly method:

Canu v. 1.7.1; runBNG v. 1.02; 3d-dna v. 170123

Expected final version:

yes

Genome coverage:

50.0x

Sequencing technology:

PacBio; BioNano; Hi-C

IDs: 2124801 [UID] 7960778 [GenBank] 7998918 [RefSeq]

See Genome Information for Anas platyrhynchos

Pathogen Detection Resources

There are 18 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003850225.1	≠	GCF_003850225.1	IASCAAS_PekingDuck_PBH1.5	Chromosome	Latest GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	1,126,159,488
Total ungapped length	1,123,243,663
Gaps between scaffolds	0
Number of scaffolds	2,149
Scaffold N50	76,129,154
Scaffold L50	5
Number of contigs	73,852
Contig N50	36,811
Contig L50	8,050
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	2,149

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM011834.1	=	NC_040046.1	0
Chromosome 2	CM011835.1	=	NC_040047.1	0
Chromosome 3	CM011836.1	=	NC_040048.1	0
Chromosome 4	CM011837.1	=	NC_040049.1	0
Chromosome 5	CM011838.1	=	NC_040050.1	0
Chromosome 6	CM011839.1	=	NC_040051.1	0
Chromosome 7	CM011840.1	=	NC_040052.1	0
Chromosome 8	CM011841.1	=	NC_040053.1	0
Chromosome 9	CM011842.1	=	NC_040054.1	0
Chromosome 10	CM011843.1	=	NC_040055.1	0
Chromosome 11	CM011844.1	=	NC_040056.1	0
Chromosome 12	CM011845.1	=	NC_040057.1	0
Chromosome 13	CM011846.1	=	NC_040058.1	0
Chromosome 14	CM011847.1	=	NC_040059.1	0
Chromosome 15	CM011848.1	=	NC_040060.1	0
Chromosome 16	CM011849.1	=	NC_040061.1	0
Chromosome 17	CM011850.1	=	NC_040062.1	0
Chromosome 18	CM011851.1	=	NC_040063.1	0
Chromosome 19	CM011852.1	=	NC_040064.1	0
Chromosome 20	CM011853.1	=	NC_040065.1	0
Chromosome 21	CM011854.1	=	NC_040066.1	0
Chromosome 22	CM011855.1	=	NC_040067.1	0
Chromosome 23	CM011856.1	=	NC_040068.1	0
Chromosome 24	CM011857.1	=	NC_040069.1	0
Chromosome 25	CM011858.1	=	NC_040070.1	0
Chromosome 26	CM011859.1	=	NC_040071.1	0
Chromosome 27	CM011860.1	=	NC_040072.1	0
Chromosome 28	CM011861.1	=	NC_040073.1	0
Chromosome 29	CM011862.1	=	NC_040074.1	0
Chromosome Z	CM011863.1	=	NC_040075.1	0
unplaced	n/a	n/a	n/a	2,119

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,126,159,488	2,149	1,123,243,663	76,129,154	71,703
Chromosome 1	202,842,836	1	202,500,625	202,842,836	10,308
Chromosome 2	155,794,081	1	155,571,873	155,794,081	8,997
Chromosome 3	117,740,338	1	117,418,500	117,740,338	7,156
Chromosome 4	76,129,154	1	76,000,522	76,129,154	4,414
Chromosome 5	64,368,458	1	64,307,661	64,368,458	4,144
Chromosome 6	33,426,532	1	32,879,171	33,426,532	1,964
Chromosome 7	39,203,905	1	39,161,618	39,203,905	2,513
Chromosome 8	36,694,554	1	36,655,446	36,694,554	2,092
Chromosome 9	26,279,995	1	26,245,919	26,279,995	1,364
Chromosome 10	19,692,863	1	19,670,694	19,692,863	992
Chromosome 11	21,891,877	1	21,850,412	21,891,877	1,389
Chromosome 12	21,275,497	1	21,260,907	21,275,497	1,018
Chromosome 13	22,092,175	1	21,987,053	22,092,175	1,336
Chromosome 14	18,840,839	1	18,813,317	18,840,839	1,133
Chromosome 15	17,858,335	1	17,807,669	17,858,335	1,061
Chromosome 16	12,628,886	1	12,615,645	12,628,886	651
Chromosome 17	1,320,815	1	1,308,186	1,320,815	218
Chromosome 18	11,763,557	1	11,751,987	11,763,557	667
Chromosome 19	10,039,220	1	9,961,183	10,039,220	462
Chromosome 20	12,500,000	1	12,452,169	12,500,000	897
Chromosome 21	15,924,246	1	15,903,249	15,924,246	1,020
Chromosome 22	8,288,790	1	8,267,764	8,288,790	434
Chromosome 23	2,322,118	1	2,280,027	2,322,118	245
Chromosome 24	6,500,654	1	6,417,825	6,500,654	509
Chromosome 25	7,494,166	1	7,464,367	7,494,166	328
Chromosome 26	1,425,195	1	1,418,145	1,425,195	215
Chromosome 27	5,818,415	1	5,764,220	5,818,415	411
Chromosome 28	7,194,986	1	7,172,166	7,194,986	763
Chromosome 29	4,587,024	1	4,583,814	4,587,024	174
Chromosome Z	77,510,708	1	77,103,794	77,510,708	9,085
unplaced	66,709,269	2,119	66,647,735	40,112	5,743

Assembly

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IASCAAS_PekingDuck_PBH1.5

See Genome Information for Anas platyrhynchos

Pathogen Detection Resources

There are 18 assemblies for this organism

History (Show revision history)

Comment

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