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lama1 laminin, alpha 1 [ Electrophorus electricus (electric eel) ]

Gene ID: 113572390, updated on 18-Jun-2024

Summary

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Gene symbol
lama1
Gene description
laminin, alpha 1
See related
Ensembl:ENSEEEG00000000421
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
human zebrafish all
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Genomic context

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See lama1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
62
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 10 NC_049544.1 (14415186..14451936, complement)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020825945.1 (1714533..1751178, complement)

Chromosome 10 - NC_049544.1Genomic Context describing neighboring genes Neighboring gene lethal(3)malignant brain tumor-like protein 4 Neighboring gene Rho GTPase activating protein 28 Neighboring gene leucine rich repeat containing 30a Neighboring gene protein tyrosine phosphatase receptor type Ma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1
Names
laminin subunit alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049544.1 Reference fEleEle1.pri

    Range
    14415186..14451936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035530600.1 → XP_035386493.1  laminin subunit alpha-1

    UniProtKB/TrEMBL
    A0A4W4DP19
    Related
    ENSEEEP00000000917.2, ENSEEET00000000936.2
    Conserved Domains (11) summary
    smart00136
    Location:16 → 268
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:949 → 993
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2144 → 2282
    LamG; Laminin G domain
    cd00055
    Location:740 → 787
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2309 → 2465
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1573 → 1820
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2014 → 2147
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1216 → 1358
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:900 → 946
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2760 → 2887
    Laminin_G_1; Laminin G domain
    cl27167
    Location:1683 → 1976
    HemX; putative uroporphyrinogen-III C-methyltransferase
Nucleotide Protein
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