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LAMA2 laminin subunit alpha 2 [ Pseudonaja textilis ]

Gene ID: 113439583, updated on 15-Mar-2024

Summary

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Gene symbol
LAMA2
Gene description
laminin subunit alpha 2
See related
Ensembl:ENSPTXG00000003859
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
Orthologs
human mouse all
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Genomic context

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See LAMA2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
65
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769336.1 (5362018..5771988)

NW_020769336.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene uncharacterized LOC113439581 Neighboring gene vesicular inhibitory amino acid transporter-like Neighboring gene uncharacterized LOC113439539 Neighboring gene Rho GTPase activating protein 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020769336 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769336.1 Reference EBS10Xv2-PRI

    Range
    5362018..5771988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026705483.1 → XP_026561268.1  laminin subunit alpha-2 isoform X1

    UniProtKB/TrEMBL
    A0A670YP36
    Conserved Domains (11) summary
    smart00136
    Location:44 → 291
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:971 → 1015
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:1233 → 1367
    LamB; Laminin B domain
    COG3883
    Location:1811 → 2057
    CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]
    cd00055
    Location:921 → 967
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2970 → 3122
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:475 → 521
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2822 → 2950
    Laminin_G_1; Laminin G domain
    pfam06009
    Location:2041 → 2175
    Laminin_II; Laminin Domain II
    pfam00052
    Location:589 → 726
    Laminin_B; Laminin B (Domain IV)
    pfam06008
    Location:1597 → 1854
    Laminin_I; Laminin Domain I

  2. XM_026705484.1 → XP_026561269.1  laminin subunit alpha-2 isoform X2

    UniProtKB/TrEMBL
    A0A670YP36
    Related
    ENSPTXP00000013921.1, ENSPTXT00000014360.1
    Conserved Domains (11) summary
    smart00136
    Location:44 → 291
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:971 → 1015
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:1233 → 1367
    LamB; Laminin B domain
    COG3883
    Location:1811 → 2057
    CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]
    cd00055
    Location:921 → 967
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2951 → 3103
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:475 → 521
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2803 → 2931
    Laminin_G_1; Laminin G domain
    pfam06009
    Location:2041 → 2175
    Laminin_II; Laminin Domain II
    pfam00052
    Location:589 → 726
    Laminin_B; Laminin B (Domain IV)
    pfam06008
    Location:1597 → 1854
    Laminin_I; Laminin Domain I
Nucleotide Protein
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