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LAMA2 laminin subunit alpha 2 [ Nothoprocta perdicaria ]

Gene ID: 112947226, updated on 15-Mar-2024

Summary

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Gene symbol
LAMA2
Gene description
laminin subunit alpha 2
See related
Ensembl:ENSNPEG00000009719
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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See LAMA2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
63
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455445.1 (726143..979643, complement)

NW_020455445.1Genomic Context describing neighboring genes Neighboring gene L3MBTL histone methyl-lysine binding protein 3 Neighboring gene uncharacterized LOC112947231 Neighboring gene Rho GTPase activating protein 18 Neighboring gene vesicular inhibitory amino acid transporter-like Neighboring gene uncharacterized LOC112947236

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020455445 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020455445.1 Reference notPer1

    Range
    726143..979643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026039256.1 → XP_025895041.1  laminin subunit alpha-2

    UniProtKB/TrEMBL
    A0A8C6ZLF0
    Related
    ENSNPEP00000013109.1, ENSNPET00000013437.1
    Conserved Domains (10) summary
    smart00180
    Location:904 → 948
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:854 → 900
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2941 → 3093
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:406 → 452
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2793 → 2921
    Laminin_G_1; Laminin G domain
    pfam06009
    Location:2007 → 2141
    Laminin_II; Laminin Domain II
    pfam00052
    Location:520 → 659
    Laminin_B; Laminin B (Domain IV)
    pfam00055
    Location:1 → 221
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:1563 → 1822
    Laminin_I; Laminin Domain I
    cl25732
    Location:1684 → 1984
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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