U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CD109 CD109 molecule [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112390826, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CD109
Gene description
CD109 molecule
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CD109 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020175674.1 (1780911..1893968, complement)

NW_020175674.1Genomic Context describing neighboring genes Neighboring gene nuclear pore complex protein Nup50-like Neighboring gene low molecular weight phosphotyrosine protein phosphatase pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 17 member 5 Neighboring gene eukaryotic translation elongation factor 1 alpha 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020175674 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
CD109 antigen

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020175674.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    1780911..1893968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024731904.1 → XP_024587672.1  CD109 antigen isoform X1

    UniProtKB/TrEMBL
    A0A341AEY0
    Conserved Domains (4) summary
    cd02897
    Location:820 → 1107
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:606 → 695
    A2M; Alpha-2-macroglobulin family
    pfam07677
    Location:1224 → 1308
    A2M_recep; A-macroglobulin receptor
    cl19929
    Location:9 → 1197
    A2M_N; MG2 domain

  2. XM_024731905.1 → XP_024587673.1  CD109 antigen isoform X2

    UniProtKB/TrEMBL
    A0A341ADL7
    Conserved Domains (4) summary
    cd02897
    Location:512 → 799
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:298 → 387
    A2M; Alpha-2-macroglobulin family
    pfam07677
    Location:916 → 1000
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:78 → 209
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.