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grin1b glutamate receptor, ionotropic, N-methyl D-aspartate 1b [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112148930, updated on 10-Jul-2024

Summary

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Gene symbol
grin1b
Gene description
glutamate receptor, ionotropic, N-methyl D-aspartate 1b
See related
EnsemblRapid:ENSOMEG00005000579
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See grin1b in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
22
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG9 NC_050520.1 (33528281..33622179, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096084.1 (243760..337626)

Linkage Group LG9 - NC_050520.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118599105 Neighboring gene protein crumbs homolog 1 Neighboring gene bile salt-activated lipase-like Neighboring gene docking protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NMDA glutamate receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ionotropic glutamate receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NMDA selective glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate receptor ionotropic, NMDA 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050520.1 Reference ASM292280v2 Primary Assembly

    Range
    33528281..33622179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024276357.2 → XP_024132125.1  glutamate receptor ionotropic, NMDA 1b isoform X2

    UniProtKB/TrEMBL
    A0A3B3BE90
    Related
    ENSOMEP00005012096.1, ENSOMET00005013670.1
    Conserved Domains (3) summary
    cd06379
    Location:8 → 385
    PBP1_iGluR_NMDA_NR1; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor
    cd13719
    Location:397 → 799
    PBP2_iGluR_NMDA_Nr1; The ligand-binding domain of the NR1 subunit of ionotropic NMDA (N-methyl-D-aspartate) glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam10562
    Location:835 → 863
    CaM_bdg_C0; Calmodulin-binding domain C0 of NMDA receptor NR1 subunit

  2. XM_024276355.2 → XP_024132123.1  glutamate receptor ionotropic, NMDA 1b isoform X1

    UniProtKB/TrEMBL
    A0A3B3BDM9, A0A3B3BE90
    Related
    ENSOMEP00005012095.1, ENSOMET00005013669.1
    Conserved Domains (3) summary
    cd06379
    Location:8 → 406
    PBP1_iGluR_NMDA_NR1; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor
    cd13719
    Location:418 → 820
    PBP2_iGluR_NMDA_Nr1; The ligand-binding domain of the NR1 subunit of ionotropic NMDA (N-methyl-D-aspartate) glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam10562
    Location:856 → 884
    CaM_bdg_C0; Calmodulin-binding domain C0 of NMDA receptor NR1 subunit

  3. XM_024276358.2 → XP_024132126.1  glutamate receptor ionotropic, NMDA 1b isoform X3

    UniProtKB/TrEMBL
    A0A3B3BEH3, A0A3B3C6P8
    Related
    ENSOMEP00005012097.1, ENSOMET00005013671.1
    Conserved Domains (3) summary
    cd06379
    Location:8 → 406
    PBP1_iGluR_NMDA_NR1; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor
    cd13719
    Location:418 → 820
    PBP2_iGluR_NMDA_Nr1; The ligand-binding domain of the NR1 subunit of ionotropic NMDA (N-methyl-D-aspartate) glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam10562
    Location:856 → 884
    CaM_bdg_C0; Calmodulin-binding domain C0 of NMDA receptor NR1 subunit

  4. XM_036213725.1 → XP_036069618.1  glutamate receptor ionotropic, NMDA 1b isoform X4

    UniProtKB/TrEMBL
    A0A3B3D3L7
    Related
    ENSOMEP00005012098.1, ENSOMET00005013672.1
    Conserved Domains (3) summary
    cd13719
    Location:397 → 799
    PBP2_iGluR_NMDA_Nr1; The ligand-binding domain of the NR1 subunit of ionotropic NMDA (N-methyl-D-aspartate) glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    cd06379
    Location:27 → 385
    PBP1_iGluR_NMDA_NR1; N-terminal leucine-isoleucine-valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor
    pfam10562
    Location:835 → 863
    CaM_bdg_C0; Calmodulin-binding domain C0 of NMDA receptor NR1 subunit
Nucleotide Protein Strain
Heading Accession and Version

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