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CD109 CD109 molecule [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111183233, updated on 15-Mar-2024

Summary

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Gene symbol
CD109
Gene description
CD109 molecule
See related
Ensembl:ENSDLEG00000003996
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See CD109 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022097993.1 (8096760..8249169, complement)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160897.1 (8096923..8248940, complement)

NW_022097993.1Genomic Context describing neighboring genes Neighboring gene nuclear pore complex protein Nup50 pseudogene Neighboring gene low molecular weight phosphotyrosine protein phosphatase pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 17 member 5 Neighboring gene eukaryotic translation elongation factor 1 alpha 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD109 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022097993.1 Reference ASM228892v3 Primary Assembly

    Range
    8096760..8249169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022590372.2 → XP_022446080.1  CD109 antigen isoform X3

    UniProtKB/TrEMBL
    A0A2Y9PJY8
    Conserved Domains (5) summary
    cd02897
    Location:774 → 1061
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:560 → 649
    A2M; Alpha-2-macroglobulin family
    pfam01835
    Location:3 → 93
    A2M_N; MG2 domain
    pfam07677
    Location:1178 → 1262
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:340 → 471
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region

  2. XM_022590373.1 → XP_022446081.1  CD109 antigen isoform X3

    UniProtKB/TrEMBL
    A0A2Y9PJY8
    Conserved Domains (5) summary
    cd02897
    Location:774 → 1061
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:560 → 649
    A2M; Alpha-2-macroglobulin family
    pfam01835
    Location:3 → 93
    A2M_N; MG2 domain
    pfam07677
    Location:1178 → 1262
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:340 → 471
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region

  3. XM_022590370.2 → XP_022446078.1  CD109 antigen isoform X1

    UniProtKB/TrEMBL
    A0A2Y9PT01
    Related
    ENSDLEP00000005499.1, ENSDLET00000006097.1
    Conserved Domains (5) summary
    cd02897
    Location:902 → 1189
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:688 → 777
    A2M; Alpha-2-macroglobulin family
    pfam01835
    Location:131 → 221
    A2M_N; MG2 domain
    pfam07677
    Location:1306 → 1390
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:468 → 599
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region

  4. XM_022590371.1 → XP_022446079.1  CD109 antigen isoform X2

    UniProtKB/TrEMBL
    A0A2Y9PGL6
    Conserved Domains (5) summary
    cd02897
    Location:820 → 1107
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:606 → 695
    A2M; Alpha-2-macroglobulin family
    pfam01835
    Location:49 → 139
    A2M_N; MG2 domain
    pfam07677
    Location:1224 → 1308
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:386 → 517
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region

  5. XM_022590374.2 → XP_022446082.1  CD109 antigen isoform X4

    UniProtKB/TrEMBL
    A0A2Y9PRT4
    Conserved Domains (4) summary
    cd02897
    Location:703 → 990
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:489 → 578
    A2M; Alpha-2-macroglobulin family
    pfam07677
    Location:1107 → 1191
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:269 → 400
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region
Nucleotide Protein
Heading Accession and Version

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