U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110979495 laminin subunit alpha-2-like [ Acanthaster planci (crown-of-thorns starfish) ]

Gene ID: 110979495, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110979495
Gene description
laminin subunit alpha-2-like
See related
EnsemblRapid:LOC110979495
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthaster planci
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Valvatacea; Valvatida; Acanthasteridae; Acanthaster
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC110979495 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
64
Annotation release Status Assembly Chr Location
100 current OKI-Apl_1.0 (GCF_001949145.1) Unplaced Scaffold NW_019091357.1 (144313..216503)

NW_019091357.1Genomic Context describing neighboring genes Neighboring gene nuclear inhibitor of protein phosphatase 1-like Neighboring gene transcription elongation factor A protein 1-like Neighboring gene 5-hydroxytryptamine receptor 1D-like Neighboring gene uncharacterized LOC110979843 Neighboring gene uncharacterized LOC110979566

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019091357 Unplaced Scaffold Reference OKI-Apl_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: laminin subunit alpha-2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Acanthaster planci Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OKI-Apl_1.0 Primary Assembly

Genomic

  1. NW_019091357.1 Reference OKI-Apl_1.0 Primary Assembly

    Range
    144313..216503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022235341.1 → XP_022091033.1  LOW QUALITY PROTEIN: laminin subunit alpha-2-like

    UniProtKB/TrEMBL
    A0A8B7YCQ2
    Related
    XP_022091033.1, XM_022235341.1
    Conserved Domains (12) summary
    smart00180
    Location:975 → 1020
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2538 → 2684
    LamG; Laminin G domain
    cd00055
    Location:926 → 973
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2338 → 2488
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1068 → 1116
    Laminin_EGF; Laminin EGF domain
    pfam06009
    Location:2026 → 2163
    Laminin_II; Laminin Domain II
    pfam00052
    Location:584 → 721
    Laminin_B; Laminin B (Domain IV)
    pfam00055
    Location:40 → 277
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam02210
    Location:2792 → 2921
    Laminin_G_2; Laminin G domain
    pfam06008
    Location:1595 → 1846
    Laminin_I; Laminin Domain I
    cl22861
    Location:2167 → 2311
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl25732
    Location:1736 → 2077
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases