U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110509560 alpha-2,8-sialyltransferase 8E [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110509560, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110509560
Gene description
alpha-2,8-sialyltransferase 8E
See related
Ensembl:ENSOMYG00000034302
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Y
Exon count:
12
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) Y NC_048593.1 (6599060..6622505)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 29 NC_035105.1 (5664935..5687079)

Chromosome Y - NC_048593.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene 60S ribosomal protein L37-like Neighboring gene small nucleolar RNA SNORD72 Neighboring gene uncharacterized LOC118945279 Neighboring gene lipoxygenase homology domain-containing protein 1-like Neighboring gene lipoxygenase homology domain-containing protein 1-like Neighboring gene E3 ubiquitin-protein ligase RNF165

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-2,8-sialyltransferase 8E

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048593.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    6599060..6622505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036967548.1 → XP_036823443.1  alpha-2,8-sialyltransferase 8E isoform X1

    UniProtKB/TrEMBL
    A0A060XTA8
    Conserved Domains (1) summary
    pfam00777
    Location:227 → 479
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_021590504.2 → XP_021446179.1  alpha-2,8-sialyltransferase 8E isoform X2

    UniProtKB/TrEMBL
    A0A060XTA8
    Conserved Domains (1) summary
    pfam00777
    Location:195 → 447
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_036967549.1 → XP_036823444.1  alpha-2,8-sialyltransferase 8E isoform X3

    UniProtKB/TrEMBL
    A0A060XTA8
    Conserved Domains (1) summary
    pfam00777
    Location:190 → 442
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_036967550.1 → XP_036823445.1  alpha-2,8-sialyltransferase 8E isoform X4

    Conserved Domains (1) summary
    pfam00777
    Location:169 → 421
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_036967552.1 → XP_036823447.1  alpha-2,8-sialyltransferase 8E isoform X6

    UniProtKB/TrEMBL
    A0A060XTA8, A0A8C7W501
    Related
    ENSOMYP00000074276.1, ENSOMYT00000080854.2
    Conserved Domains (1) summary
    pfam00777
    Location:158 → 410
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_021590505.2 → XP_021446180.1  alpha-2,8-sialyltransferase 8E isoform X7

    UniProtKB/TrEMBL
    A0A8C7T2R3, A0A8C7T590
    Related
    ENSOMYP00000074283.1, ENSOMYT00000080861.2
    Conserved Domains (1) summary
    pfam00777
    Location:122 → 374
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  7. XM_021590507.2 → XP_021446182.1  alpha-2,8-sialyltransferase 8E isoform X8

    UniProtKB/TrEMBL
    A0A8C7T2R3
    Conserved Domains (1) summary
    pfam00777
    Location:91 → 343
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  8. XM_036967551.1 → XP_036823446.1  alpha-2,8-sialyltransferase 8E isoform X5

    Conserved Domains (1) summary
    pfam00777
    Location:160 → 412
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  9. XM_036967554.1 → XP_036823449.1  alpha-2,8-sialyltransferase 8E isoform X9

    UniProtKB/TrEMBL
    A0A8C7T2R3
    Conserved Domains (1) summary
    pfam00777
    Location:82 → 334
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases