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CD109 CD109 molecule [ Phascolarctos cinereus (koala) ]

Gene ID: 110217680, updated on 15-Mar-2024

Summary

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Gene symbol
CD109
Gene description
CD109 molecule
See related
Ensembl:ENSPCIG00000018000
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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See CD109 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344033.1 (7110204..7274761)

NW_018344033.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit C1, mitochondrial pseudogene Neighboring gene solute carrier family 17 member 5 Neighboring gene SCY1-like protein 2 pseudogene Neighboring gene josephin-1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344033 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: CD109 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344033.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    7110204..7274761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021000156.1 → XP_020855815.1  LOW QUALITY PROTEIN: CD109 antigen

    UniProtKB/TrEMBL
    A0A6P5LBY9
    Related
    ENSPCIP00000023792.2, ENSPCIT00000029352.2
    Conserved Domains (5) summary
    cd02897
    Location:926 → 1213
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:712 → 803
    A2M; Alpha-2-macroglobulin family
    pfam01835
    Location:141 → 232
    A2M_N; MG2 domain
    pfam07677
    Location:1330 → 1414
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:479 → 610
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region
Nucleotide Protein
Heading Accession and Version

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