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LAMA1 laminin subunit alpha 1 [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110078890, updated on 15-Mar-2024

Summary

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Gene symbol
LAMA1
Gene description
laminin subunit alpha 1
See related
Ensembl:ENSPVIG00000003538
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
64
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150854.1 (120104..230016, complement)

NW_018150854.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 28 Neighboring gene leucine rich repeat containing 30 Neighboring gene protein tyrosine phosphatase receptor type M Neighboring gene uncharacterized LOC110078889

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018150854.1 Unplaced Scaffold Reference pvi1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018150854.1 Reference pvi1.1

    Range
    120104..230016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020793483.1 → XP_020649142.1  laminin subunit alpha-1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0TLQ6
    Conserved Domains (10) summary
    smart00136
    Location:27 → 278
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:961 → 1005
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2156 → 2295
    LamG; Laminin G domain
    cd00055
    Location:751 → 799
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2322 → 2478
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1413 → 1459
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2769 → 2897
    Laminin_G_1; Laminin G domain
    pfam06009
    Location:2026 → 2160
    Laminin_II; Laminin Domain II
    pfam00052
    Location:578 → 717
    Laminin_B; Laminin B (Domain IV)
    pfam06008
    Location:1590 → 1837
    Laminin_I; Laminin Domain I

  2. XM_020793484.1 → XP_020649143.1  laminin subunit alpha-1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0TNR9
    Related
    ENSPVIP00000004349.1, ENSPVIT00000005549.1
    Conserved Domains (10) summary
    smart00180
    Location:904 → 948
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2099 → 2238
    LamG; Laminin G domain
    cd00055
    Location:694 → 742
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2265 → 2421
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1356 → 1402
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2712 → 2840
    Laminin_G_1; Laminin G domain
    pfam06009
    Location:1969 → 2103
    Laminin_II; Laminin Domain II
    pfam00052
    Location:521 → 660
    Laminin_B; Laminin B (Domain IV)
    pfam06008
    Location:1533 → 1780
    Laminin_I; Laminin Domain I
    cl02806
    Location:1 → 221
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
Heading Accession and Version

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