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lama1 laminin, alpha 1 [ Monopterus albus (swamp eel) ]

Gene ID: 109974984, updated on 14-Mar-2024

Summary

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Gene symbol
lama1
Gene description
laminin, alpha 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Orthologs
human zebrafish all
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Genomic context

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See lama1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
64
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018128235.1 (358306..417130, complement)

NW_018128235.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 200C-like Neighboring gene uncharacterized LOC109974994 Neighboring gene erythrocyte membrane protein band 4.1-like 3a Neighboring gene uncharacterized LOC109974993

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018128235.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018128235.1 Reference M_albus_1.0 Primary Assembly

    Range
    358306..417130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020625481.1 → XP_020481137.1  laminin subunit alpha-1-like

    Conserved Domains (10) summary
    smart00136
    Location:16 → 266
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:936 → 980
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2106 → 2246
    LamG; Laminin G domain
    COG0840
    Location:1849 → 2089
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:833 → 885
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2273 → 2429
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1029 → 1077
    Laminin_EGF; Laminin EGF domain
    pfam06009
    Location:1983 → 2110
    Laminin_II; Laminin Domain II
    pfam00052
    Location:553 → 692
    Laminin_B; Laminin B (Domain IV)
    pfam06008
    Location:1546 → 1785
    Laminin_I; Laminin Domain I
Nucleotide Protein
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