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Atf6b activating transcription factor 6 beta [ Castor canadensis (American beaver) ]

Gene ID: 109699672, updated on 14-Mar-2024

Summary

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Gene symbol
Atf6b
Gene description
activating transcription factor 6 beta
See related
Ensembl:ENSCCNG00000023917
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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See Atf6b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017872597.1 (18396..31289)

NW_017872597.1Genomic Context describing neighboring genes Neighboring gene proline rich transmembrane protein 1 Neighboring gene FKBP prolyl isomerase like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017872597.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-6 beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017872597.1 Reference C.can genome v1.0

    Range
    18396..31289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020184514.1 → XP_020040103.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X8

    UniProtKB/TrEMBL
    A0A8B7W859, A0A8C0XAV2
    Related
    ENSCCNP00000024438.1, ENSCCNT00000031157.1
    Conserved Domains (2) summary
    cd14700
    Location:283 → 334
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    pfam14362
    Location:259 → 369
    DUF4407; Domain of unknown function (DUF4407)

  2. XM_020184511.1 → XP_020040100.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X5

    UniProtKB/TrEMBL
    A0A250YKV5, A0A8B7WDE3
    Conserved Domains (2) summary
    cd14700
    Location:333 → 384
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    pfam14362
    Location:309 → 419
    DUF4407; Domain of unknown function (DUF4407)

  3. XM_020184508.1 → XP_020040097.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X2

    UniProtKB/TrEMBL
    A0A250YKV5, A0A8B7W7Y7
    Conserved Domains (2) summary
    cd14700
    Location:325 → 376
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    pfam14362
    Location:301 → 411
    DUF4407; Domain of unknown function (DUF4407)

  4. XM_020184507.1 → XP_020040096.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X1

    UniProtKB/TrEMBL
    A0A250YKV5, A0A8B7W7E8
    Conserved Domains (2) summary
    cd14700
    Location:328 → 379
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    pfam14362
    Location:304 → 414
    DUF4407; Domain of unknown function (DUF4407)

  5. XM_020184509.1 → XP_020040098.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X3

    UniProtKB/TrEMBL
    A0A250YKV5, A0A8B7W854
    Conserved Domains (2) summary
    cd14700
    Location:328 → 379
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    pfam14362
    Location:304 → 414
    DUF4407; Domain of unknown function (DUF4407)

  6. XM_020184510.1 → XP_020040099.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X4

    UniProtKB/TrEMBL
    A0A250YKV5, A0A8B7W8F2
    Conserved Domains (2) summary
    cd14700
    Location:328 → 379
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    pfam14362
    Location:304 → 414
    DUF4407; Domain of unknown function (DUF4407)

  7. XM_020184512.1 → XP_020040101.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X6

    UniProtKB/TrEMBL
    A0A250YKV5, A0A8B7W7F2
    Conserved Domains (2) summary
    cd14700
    Location:328 → 379
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    pfam14362
    Location:304 → 414
    DUF4407; Domain of unknown function (DUF4407)

  8. XM_020184513.1 → XP_020040102.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X7

    UniProtKB/TrEMBL
    A0A8B7W7Z2, A0A8C0ZWL6
    Related
    ENSCCNP00000024442.1, ENSCCNT00000031162.1
    Conserved Domains (2) summary
    cd14700
    Location:328 → 379
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    pfam14362
    Location:304 → 414
    DUF4407; Domain of unknown function (DUF4407)
Nucleotide Protein
Heading Accession and Version

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