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Snrpc small nuclear ribonucleoprotein polypeptide C [ Castor canadensis (American beaver) ]

Gene ID: 109686660, updated on 14-Mar-2024

Summary

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Gene symbol
Snrpc
Gene description
small nuclear ribonucleoprotein polypeptide C
See related
Ensembl:ENSCCNG00000025920
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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See Snrpc in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870522.1 (405640..416895, complement)

NW_017870522.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 11 Neighboring gene bridge-like lipid transfer protein family member 3A Neighboring gene inflammation and lipid regulator with UBA-like and NBR1-like domains Neighboring gene probable ribosome biogenesis protein RLP24 pseudogene Neighboring gene SAM pointed domain containing ETS transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017870522.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pre-mRNA 5'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U1 small nuclear ribonucleoprotein C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017870522.1 Reference C.can genome v1.0

    Range
    405640..416895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020164092.1 → XP_020019681.1  U1 small nuclear ribonucleoprotein C

    UniProtKB/TrEMBL
    A0A250YAJ4, A0A8C0ZXL4
    Related
    ENSCCNP00000026759.1, ENSCCNT00000033899.1
    Conserved Domains (1) summary
    pfam06220
    Location:1 → 38
    zf-U1; U1 zinc finger
Nucleotide Protein
Heading Accession and Version

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