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CD109 CD109 molecule [ Bos indicus (zebu cattle) ]

Gene ID: 109563461, updated on 14-Mar-2024

Summary

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Gene symbol
CD109
Gene description
CD109 molecule
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See CD109 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
33
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 9 NC_032658.1 (12801232..12955316)

Chromosome 9 - NC_032658.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 alpha 1 Neighboring gene solute carrier family 17 member 5 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 pseudogene Neighboring gene UPF0454 protein C12orf49 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032658.1 Chromosome 9 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A preliminary sketch of horn cancer transcriptome in Indian zebu cattle. Tripathi AK, et al. Gene, 2012 Feb 1. PMID 22134011
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD109 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032658.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    12801232..12955316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019966879.1 → XP_019822438.1  CD109 antigen

    UniProtKB/TrEMBL
    A0A6P5CAD3
    Conserved Domains (6) summary
    cd02897
    Location:958 → 1245
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:744 → 833
    A2M; Alpha-2-macroglobulin family
    pfam01835
    Location:182 → 272
    A2M_N; MG2 domain
    pfam07677
    Location:1362 → 1446
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:519 → 650
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region
    cl26386
    Location:6 → 78
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
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