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LOC109058224 laminin subunit alpha-2-like [ Cyprinus carpio (common carp) ]

Gene ID: 109058224, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109058224
Gene description
laminin subunit alpha-2-like
See related
Ensembl:ENSCCRG00000023339
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109058224 in Genome Data Viewer
Location:
chromosome: A20
Exon count:
66
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) A20 NC_056591.1 (442759..625225)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017538040.1 (774835..842074)

Chromosome A20 - NC_056591.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene vesicular inhibitory amino acid transporter Neighboring gene enoyl-[acyl-carrier-protein] reductase, mitochondrial Neighboring gene Rho GTPase activating protein 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056591.1 Reference ASM1834038v1 Primary Assembly

    Range
    442759..625225
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042777209.1 → XP_042633143.1  laminin subunit alpha-2-like

    UniProtKB/TrEMBL
    A0A9J7YIU0, A0A9R0BFC3
    Conserved Domains (11) summary
    pfam03302
    Location:687 → 861
    VSP; Giardia variant-specific surface protein
    smart00136
    Location:20 → 270
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:943 → 987
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:1204 → 1332
    LamB; Laminin B domain
    smart00282
    Location:2159 → 2301
    LamG; Laminin G domain
    COG1196
    Location:1702 → 2043
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:989 → 1034
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2967 → 3119
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1564 → 1841
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2027 → 2162
    Laminin_II; Laminin Domain II
    cl02548
    Location:565 → 692
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein
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