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lama1 laminin subunit alpha 1 [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108927982, updated on 22-Oct-2023

Summary

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Gene symbol
lama1
Gene description
laminin subunit alpha 1
See related
Ensembl:ENSSFOG00015023767
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
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Genomic context

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See lama1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
64
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 7 NC_041812.1 (2115805..2171706, complement)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017371602.1 (193823..249317, complement)

Chromosome 7 - NC_041812.1Genomic Context describing neighboring genes Neighboring gene L3MBTL histone methyl-lysine binding protein 4 Neighboring gene Rho GTPase activating protein 28 Neighboring gene leucine-rich repeat-containing protein 30-like Neighboring gene receptor-type tyrosine-protein phosphatase mu-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041812.1 Reference fSclFor1.1 Primary Assembly

    Range
    2115805..2171706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018741697.2 → XP_018597213.2  laminin subunit alpha-1

    UniProtKB/TrEMBL
    A0A8C9WP34
    Related
    ENSSFOP00015076671.1, ENSSFOT00015052183.1
    Conserved Domains (10) summary
    smart00136
    Location:16 → 268
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:984 → 1027
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2132 → 2270
    LamG; Laminin G domain
    COG0840
    Location:1881 → 2109
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:1387 → 1425
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2297 → 2453
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06009
    Location:2001 → 2130
    Laminin_II; Laminin Domain II
    pfam06008
    Location:1565 → 1812
    Laminin_I; Laminin Domain I
    pfam00052
    Location:1203 → 1345
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:888 → 934
    Laminin_EGF; Laminin EGF domain
Nucleotide Protein
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