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LOC108927611 laminin subunit alpha-1-like [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108927611, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108927611
Gene description
laminin subunit alpha-1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
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Genomic context

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See LOC108927611 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
62
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 19 NC_041824.1 (4408461..4462616)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017371593.1 (4549540..4606030)

Chromosome 19 - NC_041824.1Genomic Context describing neighboring genes Neighboring gene receptor-type tyrosine-protein phosphatase mu-like Neighboring gene leucine rich repeat containing 30a Neighboring gene transmembrane protein 200C-like Neighboring gene transfer RNA arginine (anticodon UCG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041824.1 Reference fSclFor1.1 Primary Assembly

    Range
    4408461..4462616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029246330.1 → XP_029102163.1  laminin subunit alpha-1-like

    Conserved Domains (12) summary
    smart00282
    Location:2116 → 2254
    LamG; Laminin G domain
    PHA03247
    Location:2645 → 2725
    PHA03247; large tegument protein UL36; Provisional
    cd00055
    Location:891 → 939
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2732 → 2878
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR02168
    Location:1739 → 2071
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04886
    Location:2660 → 2694
    PT; PT repeat
    pfam06009
    Location:1986 → 2119
    Laminin_II; Laminin Domain II
    pfam02210
    Location:2488 → 2624
    Laminin_G_2; Laminin G domain
    pfam06008
    Location:1552 → 1772
    Laminin_I; Laminin Domain I
    pfam00052
    Location:1199 → 1335
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:456 → 501
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:34 → 270
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
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