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LOC108466984 caffeoylshikimate esterase [ Gossypium arboreum ]

Gene ID: 108466984, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108466984
Gene description
caffeoylshikimate esterase
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108466984 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 6 NC_069075.1 (42950395..42951439, complement)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 2 NC_030665.1 (42046323..42047593, complement)

Chromosome 6 - NC_069075.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108484712 Neighboring gene helicase-like transcription factor CHR28 Neighboring gene serine carboxypeptidase-like 31 Neighboring gene NAC transcription factor 25-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caffeoylshikimate esterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069075.1 Reference ASM2569848v2 Primary Assembly

    Range
    42950395..42951439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017767417.2 → XP_017622906.1  caffeoylshikimate esterase

    Conserved Domains (1) summary
    cl21494
    Location:3 → 312
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein
Heading Accession and Version

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