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LOC108162760 laminin subunit alpha-1 [ Drosophila miranda ]

Gene ID: 108162760, updated on 10-May-2024

Summary

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Gene symbol
LOC108162760
Gene description
laminin subunit alpha-1
See related
EnsemblRapid:LOC108162760
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila miranda
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See LOC108162760 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
102 current D.miranda_PacBio2.1 (GCF_003369915.1) 4 NC_046677.1 (13489937..13565067, complement)
101 previous assembly DroMir_2.2 (GCF_000269505.1) 4 NC_030306.1 (1295749..1370945)

Chromosome 4 - NC_046677.1Genomic Context describing neighboring genes Neighboring gene nardilysin-like Neighboring gene male sterile (2) 34Fe Neighboring gene modular serine protease-like Neighboring gene uncharacterized LOC117188570 Neighboring gene Dual-specificity tyrosine phosphorylation-regulated kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila miranda Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference D.miranda_PacBio2.1

Genomic

  1. NC_046677.1 Reference D.miranda_PacBio2.1

    Range
    13489937..13565067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017297642.2 → XP_017153131.2  laminin subunit alpha-1 isoform X1

    Related
    XP_017153131.2, XM_017297642.2
    Conserved Domains (9) summary
    smart00180
    Location:1791 → 1836
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1168 → 1215
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3210 → 3365
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR02168
    Location:2097 → 2408
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00052
    Location:1504 → 1644
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1217 → 1265
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:174 → 417
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam02210
    Location:2822 → 2962
    Laminin_G_2; Laminin G domain
    cl22861
    Location:2449 → 2524
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. XM_017297644.2 → XP_017153133.1  laminin subunit alpha-1 isoform X3

    Related
    XP_017153133.1, XM_017297644.2

  3. XM_017297643.2 → XP_017153132.2  laminin subunit alpha-1 isoform X2

    Related
    XP_017153132.2, XM_017297643.2
    Conserved Domains (9) summary
    smart00180
    Location:1791 → 1836
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1168 → 1215
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2604 → 2771
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR02168
    Location:2097 → 2408
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00052
    Location:1504 → 1644
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1217 → 1265
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:174 → 417
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam02210
    Location:2822 → 2962
    Laminin_G_2; Laminin G domain
    cl22861
    Location:2449 → 2524
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

RNA

  1. XR_004472775.1 RNA Sequence

    Related
    XR_004472775.1
Nucleotide Protein Strain
Heading Accession and Version

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