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lama2 laminin, alpha 2 [ Austrofundulus limnaeus ]

Gene ID: 106522650, updated on 13-Mar-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
71
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952535.1 (890950..1125359, complement)

NW_013952535.1Genomic Context describing neighboring genes Neighboring gene signal-induced proliferation-associated 1 like 1 Neighboring gene uncharacterized LOC106522647 Neighboring gene regulator of G-protein signaling 6-like Neighboring gene vesicular inhibitory amino acid transporter-like Neighboring gene vesicular inhibitory amino acid transporter-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952535.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2
Names
laminin subunit alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952535.1 Reference Austrofundulus_limnaeus-1.0

    Range
    890950..1125359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014015734.1 → XP_013871188.1  laminin subunit alpha-2

    UniProtKB/TrEMBL
    A0A2I4BTZ9
    Conserved Domains (12) summary
    smart00180
    Location:1042 → 1086
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:1303 → 1431
    LamB; Laminin B domain
    cd00055
    Location:901 → 945
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3067 → 3218
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:567 → 696
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1181 → 1238
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2902 → 3029
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:37 → 272
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam01442
    Location:1893 → 2060
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    pfam04871
    Location:1837 → 1937
    Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
    pfam06008
    Location:1672 → 1925
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2125 → 2246
    Laminin_II; Laminin Domain II
Nucleotide Protein
Heading Accession and Version

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