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LOC106163871 laminin subunit alpha-2 [ Lingula anatina ]

Gene ID: 106163871, updated on 21-Dec-2023

Summary

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Gene symbol
LOC106163871
Gene description
laminin subunit alpha-2
See related
EnsemblRapid:LOC106163871
Gene type
protein coding
RefSeq status
MODEL
Organism
Lingula anatina
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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Genomic context

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See LOC106163871 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
65
Annotation release Status Assembly Chr Location
101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775303.1 (358627..427867)
100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013578255.1 (358628..427867)

NW_019775303.1Genomic Context describing neighboring genes Neighboring gene phosphoethanolamine N-methyltransferase 1 Neighboring gene uncharacterized LOC106163836 Neighboring gene A-kinase anchor protein 7 Neighboring gene A-kinase anchor protein 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LinAna2.0 Primary Assembly

Genomic

  1. NW_019775303.1 Reference LinAna2.0 Primary Assembly

    Range
    358627..427867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013541577.2 → XP_013397031.1  laminin subunit alpha-2 isoform X1

    UniProtKB/TrEMBL
    A0A1S3IGN9
    Related
    XP_013397031.1, XM_013541577.2
    Conserved Domains (11) summary
    smart00180
    Location:1075 → 1120
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2260 → 2411
    LamG; Laminin G domain
    COG0840
    Location:1845 → 2226
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:1025 → 1073
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3047 → 3200
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:569 → 708
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1170 → 1218
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:42 → 278
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:1697 → 1941
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2129 → 2252
    Laminin_II; Laminin Domain II
    cl23910
    Location:1687 → 2135
    Replic_Relax; Replication-relaxation

  2. XM_013541579.2 → XP_013397033.1  laminin subunit alpha-2 isoform X3

    UniProtKB/TrEMBL
    A0A1S3IFV8
    Related
    XP_013397033.1, XM_013541579.2
    Conserved Domains (11) summary
    smart00180
    Location:1061 → 1106
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2246 → 2397
    LamG; Laminin G domain
    COG0840
    Location:1831 → 2212
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:1011 → 1059
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3033 → 3186
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:569 → 708
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1156 → 1204
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:42 → 278
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:1683 → 1927
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2115 → 2238
    Laminin_II; Laminin Domain II
    cl23910
    Location:1673 → 2121
    Replic_Relax; Replication-relaxation

  3. XM_013541578.2 → XP_013397032.1  laminin subunit alpha-2 isoform X2

    UniProtKB/TrEMBL
    A0A1S3IFM7
    Related
    XP_013397032.1, XM_013541578.2
    Conserved Domains (11) summary
    smart00180
    Location:1068 → 1113
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2253 → 2404
    LamG; Laminin G domain
    COG0840
    Location:1838 → 2219
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:1018 → 1066
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3040 → 3193
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:569 → 701
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1163 → 1211
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:42 → 278
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:1690 → 1934
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2122 → 2245
    Laminin_II; Laminin Domain II
    cl23910
    Location:1680 → 2128
    Replic_Relax; Replication-relaxation

  4. XM_013541580.1 → XP_013397034.1  laminin subunit alpha-2 isoform X4

    UniProtKB/TrEMBL
    A0A1S3IHS1
    Related
    XP_013397034.1, XM_013541580.1
    Conserved Domains (11) summary
    smart00180
    Location:952 → 997
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2137 → 2288
    LamG; Laminin G domain
    COG0840
    Location:1722 → 2103
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:902 → 950
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2924 → 3077
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:446 → 585
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1047 → 1095
    Laminin_EGF; Laminin EGF domain
    pfam06008
    Location:1574 → 1818
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2006 → 2129
    Laminin_II; Laminin Domain II
    cl02806
    Location:2 → 155
    Laminin_N; Laminin N-terminal (Domain VI)
    cl23910
    Location:1564 → 2012
    Replic_Relax; Replication-relaxation
Nucleotide Protein
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