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LOC105939457 gastrula zinc finger protein XlCGF57.1-like [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105939457, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105939457
Gene description
gastrula zinc finger protein XlCGF57.1-like
See related
EnsemblRapid:ENSFHEG00000000322
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105939457 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 10 NC_046370.1 (19894938..19899818)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234544.1 (392089..403196, complement)

Chromosome 10 - NC_046370.1Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene gastrula zinc finger protein XlCGF58.1-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1-like; zinc finger protein OZF-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046370.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    19894938..19899818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021308156.2 → XP_021163831.2  gastrula zinc finger protein XlCGF57.1-like isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:334 → 498
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:338 → 358
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_036142282.1 → XP_035998175.1  gastrula zinc finger protein XlCGF57.1-like isoform X1

    Related
    ENSFHEP00000012174.2, ENSFHET00000019339.2
    Conserved Domains (2) summary
    COG5048
    Location:334 → 498
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:338 → 358
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_036142284.1 → XP_035998177.1  zinc finger protein OZF-like isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:334 → 473
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:338 → 358
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_036142283.1 → XP_035998176.1  gastrula zinc finger protein XlCGF57.1-like isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:334 → 498
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:338 → 358
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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