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PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 [ Microcebus murinus (gray mouse lemur) ]

Gene ID: 105873706, updated on 13-Mar-2024

Summary

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Gene symbol
PRPF4
Gene description
pre-mRNA splicing tri-snRNP complex factor PRPF4
See related
Ensembl:ENSMICG00000015022
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcebus murinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
Orthologs
human mouse all
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Genomic context

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See PRPF4 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Mmur_3.0 (GCF_000165445.2) 10 NC_033669.1 (76987885..77003762)
100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012196208.1 (6286928..6302827, complement)

Chromosome 10 - NC_033669.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 31 member 1 Neighboring gene dual specificity protein phosphatase 12 pseudogene Neighboring gene cell division cycle 26 Neighboring gene ring finger protein 183 Neighboring gene WD repeat domain 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U4 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6 small nuclear ribonucleoprotein Prp4
Names
pre-mRNA processing factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmur_3.0 Primary Assembly

Genomic

  1. NC_033669.1 Reference Mmur_3.0 Primary Assembly

    Range
    76987885..77003762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012768889.1 → XP_012624343.1  U4/U6 small nuclear ribonucleoprotein Prp4 isoform X2

    UniProtKB/TrEMBL
    A0A8B7GN66, A0A8C5V3D0
    Related
    ENSMICP00000013700.2, ENSMICT00000015025.3
    Conserved Domains (4) summary
    smart00500
    Location:102 → 140
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    COG2319
    Location:227 → 518
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:232 → 518
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:233 → 270
    7WD40; WD40 repeat [structural motif]

  2. XM_012768888.1 → XP_012624342.1  U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1

    UniProtKB/TrEMBL
    A0A8B7GNZ9, A0A8C5V3D0
    Related
    ENSMICP00000024072.1, ENSMICT00000048296.2
    Conserved Domains (4) summary
    smart00500
    Location:103 → 141
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    COG2319
    Location:228 → 519
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:233 → 519
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:234 → 271
    7WD40; WD40 repeat [structural motif]

  3. XM_020289444.1 → XP_020145033.1  U4/U6 small nuclear ribonucleoprotein Prp4 isoform X3

    UniProtKB/TrEMBL
    A0A8B7XDE5
    Conserved Domains (2) summary
    cd00200
    Location:8 → 276
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:42 → 78
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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