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REXO5 RNA exonuclease 5 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105810933, updated on 13-Mar-2024

Summary

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Gene symbol
REXO5
Gene description
RNA exonuclease 5
See related
Ensembl:ENSPCOG00000018775
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See REXO5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012147523.1 (5293656..5326462, complement)

NW_012147523.1Genomic Context describing neighboring genes Neighboring gene actin-related protein 2/3 complex subunit 1A pseudogene Neighboring gene dynein axonemal heavy chain 3 Neighboring gene LYR motif containing 1 Neighboring gene defective in cullin neddylation 1 domain containing 3 Neighboring gene ERI1 exoribonuclease family member 2 Neighboring gene acyl-CoA synthetase medium chain family member 3 Neighboring gene THUMP domain containing 1 Neighboring gene acyl-CoA synthetase medium chain family member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012147523.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative RNA exonuclease NEF-sp

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012147523.1 Reference Pcoq_1.0 Primary Assembly

    Range
    5293656..5326462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012644991.1 → XP_012500445.1  putative RNA exonuclease NEF-sp isoform X1

    UniProtKB/TrEMBL
    A0A2K6FJP2
    Related
    ENSPCOP00000014192.1, ENSPCOT00000024799.1
    Conserved Domains (4) summary
    cd06145
    Location:230 → 378
    REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
    COG0847
    Location:259 → 394
    DnaQ; DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination and repair]
    cd12273
    Location:507 → 577
    RRM1_NEFsp; RNA recognition motif 1 in vertebrate putative RNA exonuclease NEF-sp
    cl17169
    Location:603 → 673
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_012644992.1 → XP_012500446.1  putative RNA exonuclease NEF-sp isoform X2

    UniProtKB/TrEMBL
    A0A2K6FJM1
    Related
    ENSPCOP00000014194.1, ENSPCOT00000024801.1
    Conserved Domains (4) summary
    cd06145
    Location:230 → 378
    REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
    COG0724
    Location:563 → 636
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG0847
    Location:259 → 394
    DnaQ; DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination and repair]
    cl17169
    Location:572 → 642
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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