Conserved Protein Domain Family
DnaQ

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COG0847: DnaQ (this model, PSSM-Id:223916 is obsolete and has been replaced by 440608)
DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination and repair]
Statistics
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PSSM-Id: 223916
Aligned: 95 rows
Threshold Bit Score: 58.7028
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
19115539   76 ENYPRLQTTENNlqkplkisdlqelvfwcladgqaPSWVLVRNKQMIHRAvillvpglepsqfgfqpvrgnkhsflLPNL 155  fission yeast
19074460    6 ELKRLTVYDIQRilcwafnlskrpsflplratdrpDTINMVKLEETSENIsrl--------------------lgkLKAR 65   Encephalitozoon c...
586926        --------------------------------------------------------------------------------      Salmonella typhim...
19115627   59 LPYKYDNCKLSIcvpivttcipyhsvenlnfnirqNISTTLNLEKTNDSIketknenfrmdvletykckqlnhqttHLPT 138  fission yeast
1175466   736 lpkklhlrrvndtmqcvsqkisnldkdqqslsvyvLRGIIYEIRQNGEEP--------------------------HFVS 789  fission yeast
19113423    1 MS-SSNWEKLKKkl-------------------dsAKSGRVEKKHSNEKK---------------------------YLK 33   fission yeast
1709565   745 efsnirssknwltsefygsiiknkavlrstaselkgTSHIFKYELNGYVAk-------------------------ITDN 799  baker's yeast
1723780   101 VLFIPGLQPDDFengkntfneisddnfkyipgeiaSTFHTFPVMAPGSKMtlfspynsfinvglskmekinklkelQKKK 180  baker's yeast
6323136     3 SLLRPVDLVNQPlgfqerykilqklfkqlqkayahTKGTNIDLERLATRLevhvakn------------slsgqsyKFNM 70   baker's yeast
6324493     1 MALSSNWQALLAse-------------------snPTSNGKNKQSNRKIR---------------------------NVK 34   baker's yeast
19115539  156 LNENGPIQLPDFCEVFDRawptrspgdrfrvfspvnaflqsplsneqkkkrdketramasfskpsdylmsyesfiedeyp 235  fission yeast
19074460   66 HTALVNEQLSLDDIVECIlrd---------------------------------------------------------gg 88   Encephalitozoon c...
586926        --------------------------------------------------------------------------------      Salmonella typhim...
19115627  139 NTVLKKRSLFNDAISIVPnkkkqlvsaistnsdsqgassniiptpkydsnspaghelrkrmthllyesykdlgysnaess 218  fission yeast
1175466   790 TIRVSDNTSSDNPDDNRWyifndflv-----------------------------------------------kevteee 822  fission yeast
19113423   34 SVKGKNNENENSYIVDKKr------------------------------------------------------------- 52   fission yeast
1709565   800 NNETRLVTYVKKYNPKENcfkwlmfndy-------------------------------------------lvveiteee 836  baker's yeast
1723780   181 KITINDLVLSEQQLVANDypldsgdtnfdtdwvqtvdfthggshif------aldcemclseqglvltrislvnfdnevi 254  baker's yeast
6323136    71 SILLRDVLKYKGDLSKIKin----------------------------------------------------------gr 92   baker's yeast
6324493    35 KVSKTVNVSSTTQYAPRKrkng-------------------------------------------------------ski 59   baker's yeast
19115539  236 LHPTVMKgEEVtqpsgwvasagdfhSPPINPKILAIDCEMVRTEngleiarvtIVDMKSEVIYDEFVKPEspvTDYVTQY 315  fission yeast
19074460   89 YDGIIPSlEYVr--------------MDNLPLIPMVRFEDVYRSg--------IFVDSKSPQPEIDVSKYrraHVSALHD 146  Encephalitozoon c...
586926      1 --MKPAPgAEP--------------VRMYKSPYGGKYGVWRLADc-------vPMRAKRPQTEKQRLASTr-lGLQARMK 56   Salmonella typhim...
19115627  219 MLALLDEkNICetan-------skmIYSSSCKSKILSLKKAPKKneiqgstpdEKLESLVHSEEELILWGyniGDVAPVN 291  fission yeast
1175466   823 ALTVHGPwKIPiivy-------yekLDTKIPQWDEVSDYTLLYQpysl--nknPPINKIQPLTTDEMLYP---KMLVGID 890  fission yeast
19113423   53 ----MNElKKF--------------AK-ENDIPESQVLDAYG--------------VDASKLTRKTNLETl--GKYIAMD 97   fission yeast
1709565   837 ALKMTYPwKTPeii---------iyCDAEELRKPFFSVDTYSINy-------dILFRDYFANGIRDTARRe--YKLLTHD 898  baker's yeast
1723780   255 YEELVKP-DVP--------------IVDYLTRYSGITEEKLTVGa-------kKTLREVQKDLLKIISRS---DILIGHS 309  baker's yeast
6323136    93 PLKGAKPhLSSign--------ansITTKSKAMEALKALILDSKv-------lEKNGYIVKEMQNKTNDDnstQLYAPCL 157  baker's yeast
6324493    60 MDMVYNMnKEI--------------SKHEKDKLEGKVFEFNPNKantsttikePVKVGISEDTRINSNKSkeiGKYIAMD 125  baker's yeast
19115539  316 sgi--teeKLRNVTTVLSDVQSYLKKTVdnnt----vllGHSLNSDLNCLKFTHPHiidtani---ynhtrgpPSKPSLK 386  fission yeast
19074460  147 i-------VALDVEKVRTKMGKEPGRVTmvd------cnGEVIYDKIIKPKEPVVDyltk---------ysglTKEVVDR 204  Encephalitozoon c...
586926     57 ser--grfAMLAHTWLALGPVFLDTETTg----------LDAGAQALEIGLVNARG------------------ERIFET 106  Salmonella typhim...
19115627  292 pp-----dELRECDRCGTRFADPRGPCTyhwgklfrekqGGEKIRTYTCCGVKEGDssgcii------ednhvFKYRHLP 360  fission yeast
1175466   891 se-----fVALQQEETEVRSDGTKSTIKp----------SKLSLARVSVLRGEGPNkglpfi------ddyvaTDDKVTD 949  fission yeast
19113423   98 c-------EMVGVADD--MSVLARVSIVny--------hGHVVYDTYVRPKEKVTDw---------------rTWVSGVK 145  fission yeast
1709565   899 eapksgtlVAIDAEFVSLQSELCEIDHQgirsiirpkrtALARISIIRGEEGELYGvpfv---------ddyvVNTNHIE 969  baker's yeast
1723780   310 --------LQNDLKVMKLKHPLVVDTAIiyh-----hkaGDPFKPSLKYLSETFLNksiqngehdsvedaracLELTKLK 376  baker's yeast
6323136   158 rcs--snfKKTDIMEKTLCRYHPLKRIYnrdtknhqypcCGETTDSVSFLRLGCKTffhhvfrgesydelckiSKFSSTD 235  baker's yeast
6324493   126 c-------EFVGVGPEGKESALARISIVny--------fGHVVLDEFVKPREKVVEw---------------rTWVSGIK 175  baker's yeast
19115539  387 WLATkwlRREIQKA-GALG------HDSAEDALACVDLLKLKVKNgpafglfnqdfesifhRLSRQQPTpligAIADYGn 459  fission yeast
19074460  205 GIDIeivRNEVLNFiGTNTvi--igHGIENDLSSLRLYHDKIIDTahlflsplgrkislaqLARTYLAKdihvETHDSRv 282  Encephalitozoon c...
586926    107 RLKP---TVGIDPAaAAVQ--------IVTEPYRFPVLSVRLA------------------------------------- 138  Salmonella typhim...
19115627  361 YLASvhpFSYLPDStNSKQl----sHCALDCELCYTTNGMELARLtvvakesiimdvfikpKGKILSLNtrfsGIHDAKe 436  fission yeast
1175466   950 YLTE---YSGIHPGdLDPDrs---pYNVVPLKVAYKKLRLLVNAGcif-----------vgHGLQKDFRiinlLVPPEQv 1012 fission yeast
19113423  146 SFHM---RDAPSFEkVQAE------VAKILDNRVLVGHAVHNDLKv---------------LLLSHPRR----MIRDTSr 197  fission yeast
1709565   970 DYLTr--YSGILPGdLDPEks---tKRLVRRNVVYRKVWLLMQLGcvf-----------vgHGLNNDFKhiniNVPRNQi 1033 baker's yeast
1723780   377 ILNGl--AFGIGIN-TENLft--klHRFEVKTVLLNDMIIKNHTEddskg-------qlirCVEDDETWthihENLNKDv 444  baker's yeast
6323136   236 DIDGvenVLSLDCEmAFTSlgyemiRLTIVDFFTGKTLFDHVIQPigdivd----lnsdfsGVHEIDRTncptYKEALDv 311  baker's yeast
6324493   176 PEHM---KNAITFKeAQKK------TADILEGRILVGHALKHDLEa---------------LMLSHPKS----LLRDTSr 227  baker's yeast
19115539  460 pescigkaahksvscanddevVSAVVSLSDMHNFVWGRFRELEHAAMWNANRNTKQENNSDtdtendsveedqvTSYSSA 539  fission yeast
19074460  283 davtclel-----lsvkiqymLRVTDPGCPKLKIQAIIEKKCASDLLKHDRGHLNIAACSYrdlakhlksyrkrRECLWM 357  Encephalitozoon c...
586926        --------------------------------------------------------------------------------      Salmonella typhim...
19115627  437 lesg------------itmdqMYIKIKELGMNKNTILIGHGLENDLNAMRLIHKRVIDTALlfthargppfrysLKYLTK 504  fission yeast
1175466  1013 vdt--------------vdlfFLSSRQRKLSLKFLAWYLLDEEIQLTEHDSIEDALTALKLydcydklksqgklEETLDN 1078 fission yeast
19113423  198 fs----------------gyrKL-AKGRTPGLKKLAEVILGRDIQSGQHSSVQDAQATMEL-------------YKKVKK 247  fission yeast
1709565  1034 rd----------------taiYFLQGKRYLSLRYLAYVLLGMNIQEGNHDSIEDAHTALILykkylhlkekaifEKVLNS 1097 baker's yeast
1723780   445 klivg----------riknleRSRNYNKKPRKETPSFDASMVLHDIGQHLTQLYENATPGTmilimsgtgdtrpWNNLST 514  baker's yeast
6323136   312 flsenlinknsilighglendLNVMRLFHNKVIDTAILYSRTKFKVSLKNLAFEVLSRKIQngehdssqdaiatMDVVKV 391  baker's yeast
6324493   228 hl----------------pfrKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLL-------------YKKEKT 278  baker's yeast
19115539  540 LE 541  fission yeast
19074460  358 LI 359  Encephalitozoon cuniculi
586926        --      Salmonella typhimurium
19115627  505 KY 506  fission yeast
1175466  1079 IY 1080 fission yeast
19113423  248 EM 249  fission yeast
1709565  1098 VY 1099 baker's yeast
1723780   515 EL 516  baker's yeast
6323136   392 KI 393  baker's yeast
6324493   279 EF 280  baker's yeast
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