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LAMA5 laminin subunit alpha 5 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105301444, updated on 30-Mar-2024

Summary

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Gene symbol
LAMA5
Gene description
laminin subunit alpha 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See LAMA5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
77
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889020.1 (83985..131907, complement)

NW_011889020.1Genomic Context describing neighboring genes Neighboring gene oxysterol binding protein like 2 Neighboring gene uncharacterized LOC105301410 Neighboring gene ADRM1 26S proteasome ubiquitin receptor Neighboring gene Cdk5 and Abl enzyme substrate 2 Neighboring gene ribosomal protein S21

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889020 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889020.1 Reference Pvam_2.0

    Range
    83985..131907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023519895.1 → XP_023375663.1  laminin subunit alpha-5

    UniProtKB/TrEMBL
    A0A6P6BKS1
    Conserved Domains (11) summary
    smart00180
    Location:1678 → 1719
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2642 → 2771
    LamG; Laminin G domain
    cd00055
    Location:385 → 435
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3392 → 3550
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1235 → 1283
    Laminin_EGF; Laminin EGF domain
    pfam06009
    Location:2287 → 2417
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1347 → 1483
    Laminin_B; Laminin B (Domain IV)
    pfam00055
    Location:1 → 239
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:1847 → 2105
    Laminin_I; Laminin Domain I
    pfam12881
    Location:405 → 492
    NUT; NUT protein
    cl25732
    Location:2033 → 2380
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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