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YTHDC2 YTH N6-methyladenosine RNA binding protein C2 [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104672114, updated on 12-Mar-2024

Summary

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Gene symbol
YTHDC2
Gene description
YTH N6-methyladenosine RNA binding protein C2
See related
Ensembl:ENSRROG00000039477
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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See YTHDC2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
30
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 3 NC_044551.1 (164143228..164224248)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010818487.1 (680108..761055)

Chromosome 3 - NC_044551.1Genomic Context describing neighboring genes Neighboring gene MCC regulator of WNT signaling pathway Neighboring gene testis specific serine kinase 1B Neighboring gene U4atac minor spliceosomal RNA Neighboring gene A-kinase anchor protein 4-like Neighboring gene cyclin B3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3'-5' RNA helicase YTHDC2
Names
YTH domain containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044551.1 Reference ASM756505v1 Primary Assembly

    Range
    164143228..164224248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010375829.2 → XP_010374131.1  3'-5' RNA helicase YTHDC2 isoform X1

    UniProtKB/TrEMBL
    A0A2K6QS09
    Related
    ENSRROP00000031564.1
    Conserved Domains (6) summary
    cd06007
    Location:46 → 104
    R3H_DEXH_helicase; R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine ...
    COG1643
    Location:189 → 1016
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    sd00045
    Location:505 → 537
    ANK; ANK repeat [structural motif]
    cd17987
    Location:193 → 368
    DEXHc_YTHDC2; DEXH-box helicase domain of YTH domain containing 2
    pfam04146
    Location:1288 → 1419
    YTH; YT521-B-like domain
    pfam07717
    Location:971 → 1066
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

  2. XM_030927515.1 → XP_030783375.1  3'-5' RNA helicase YTHDC2 isoform X2

    Conserved Domains (6) summary
    cd06007
    Location:46 → 104
    R3H_DEXH_helicase; R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine ...
    COG0666
    Location:453 → 537
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    COG1643
    Location:189 → 980
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    sd00045
    Location:469 → 501
    ANK; ANK repeat [structural motif]
    pfam04146
    Location:1252 → 1383
    YTH; YT521-B-like domain
    pfam07717
    Location:935 → 1030
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

  3. XM_030927516.1 → XP_030783376.1  3'-5' RNA helicase YTHDC2 isoform X3

    Conserved Domains (5) summary
    COG1643
    Location:27 → 854
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    sd00045
    Location:343 → 375
    ANK; ANK repeat [structural motif]
    cd17987
    Location:31 → 206
    DEXHc_YTHDC2; DEXH-box helicase domain of YTH domain containing 2
    pfam04146
    Location:1126 → 1257
    YTH; YT521-B-like domain
    pfam07717
    Location:809 → 904
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

  4. XM_030927517.1 → XP_030783377.1  3'-5' RNA helicase YTHDC2 isoform X4

    Conserved Domains (6) summary
    COG0666
    Location:189 → 273
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    COG1643
    Location:318 → 716
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    sd00045
    Location:205 → 237
    ANK; ANK repeat [structural motif]
    pfam04146
    Location:988 → 1119
    YTH; YT521-B-like domain
    pfam07717
    Location:671 → 766
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    cl28899
    Location:1 → 68
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
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