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LOC104532901 aspartyl/asparaginyl beta-hydroxylase [ Antrostomus carolinensis (chuck-will's-widow) ]

Gene ID: 104532901, updated on 3-Aug-2024

Summary

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Gene symbol
LOC104532901
Gene description
aspartyl/asparaginyl beta-hydroxylase
Locus tag
N321_13772
Gene type
protein coding
RefSeq status
MODEL
Organism
Antrostomus carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Caprimulgiformes; Caprimulgidae; Antrostomus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC104532901 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM70074v1 (GCF_000700745.1) Unplaced Scaffold NW_010296278.1 (7830..45114)

NW_010296278.1Genomic Context describing neighboring genes Neighboring gene clavesin-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010296278 Unplaced Scaffold Reference ASM70074v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Antrostomus carolinensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70074v1

Genomic

  1. NW_010296278.1 Reference ASM70074v1

    Range
    7830..45114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010178223.1 → XP_010176525.1  aspartyl/asparaginyl beta-hydroxylase

    See identical proteins and their annotated locations for XP_010176525.1

    UniProtKB/TrEMBL
    A0A094KQH2
    Conserved Domains (4) summary
    TIGR02795
    Location:17 → 130
    tol_pal_ybgF; tol-pal system protein YbgF
    sd00006
    Location:133 → 157
    TPR; TPR repeat [structural motif]
    cd15830
    Location:21 → 134
    BamD; BamD lipoprotein, a component of the beta-barrel assembly machinery
    pfam05118
    Location:266 → 419
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
Heading Accession and Version

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