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CHD1L chromodomain helicase DNA binding protein 1 like [ Chaetura pelagica (chimney swift) ]

Gene ID: 104389288, updated on 3-Aug-2024

Summary

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Gene symbol
CHD1L
Gene description
chromodomain helicase DNA binding protein 1 like
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
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Genomic context

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See CHD1L in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009953386.1 (675741..698608, complement)

NW_009953386.1Genomic Context describing neighboring genes Neighboring gene eukaryotic initiation factor 4A-III-like Neighboring gene VANGL planar cell polarity protein 1 Neighboring gene fatty acid amide hydrolase-like Neighboring gene transmembrane protein 39A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009953386.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009953386.1 Reference ChaPel_1.0

    Range
    675741..698608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009998257.1 → XP_009996559.1  chromodomain-helicase-DNA-binding protein 1-like

    Conserved Domains (4) summary
    cd00046
    Location:33 → 173
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:310 → 398
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd03331
    Location:647 → 797
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    pfam00176
    Location:17 → 296
    SNF2_N; SNF2 family N-terminal domain
Nucleotide Protein
Heading Accession and Version

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