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LAMA1 laminin subunit alpha 1 [ Charadrius vociferus (killdeer) ]

Gene ID: 104281918, updated on 3-Aug-2024

Summary

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Gene symbol
LAMA1
Gene description
laminin subunit alpha 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See LAMA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
62
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009647242.1 (1401215..1483311, complement)

NW_009647242.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 200C Neighboring gene Rho GTPase activating protein 28 Neighboring gene leucine rich repeat containing 30 Neighboring gene protein tyrosine phosphatase receptor type M

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009647242.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009647242.1 Reference ASM70802v2

    Range
    1401215..1483311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009879979.1 → XP_009878281.1  LOW QUALITY PROTEIN: laminin subunit alpha-1

    Conserved Domains (10) summary
    smart00180
    Location:662 → 685
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2099 → 2238
    LamG; Laminin G domain
    cd00055
    Location:854 → 901
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2265 → 2418
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:521 → 649
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:997 → 1045
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2709 → 2837
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:1 → 221
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:1524 → 1782
    Laminin_I; Laminin Domain I
    pfam06009
    Location:1969 → 2103
    Laminin_II; Laminin Domain II
Nucleotide Protein
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