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TMTC2 transmembrane O-mannosyltransferase targeting cadherins 2 [ Egretta garzetta (little egret) ]

Gene ID: 104132973, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC2
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2
Locus tag
Z169_14316
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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See TMTC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009260774.1 (6402730..6648865)

NW_009260774.1Genomic Context describing neighboring genes Neighboring gene methyltransferase like 25 Neighboring gene WW domain-containing transcription regulator protein 1-like Neighboring gene solute carrier family 6 member 15 Neighboring gene tetraspanin 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009260774 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2
Names
Transmembrane and TPR repeat-containing protein 2
transmembrane and tetratricopeptide repeat containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009260774.1 Reference ASM68718v1 Primary Assembly

    Range
    6402730..6648865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009646330.1 → XP_009644625.1  protein O-mannosyl-transferase TMTC2

    UniProtKB/TrEMBL
    A0A091JMA5
    Conserved Domains (6) summary
    smart00028
    Location:744 → 773
    TPR; Tetratricopeptide repeats
    sd00006
    Location:629 → 657
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:629 → 656
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:383 → 457
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:629 → 690
    TPR_11; TPR repeat
    pfam13424
    Location:693 → 770
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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