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Conserved domains on  [gi|697848504|ref|XP_009644625|]
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protein O-mannosyl-transferase TMTC2 [Egretta garzetta]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
383-457 1.40e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


:

Pssm-ID: 462468  Cd Length: 75  Bit Score: 134.96  E-value: 1.40e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697848504  383 GNKPPSFSNSDNPAADSDSFLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKAVSDWRNLHTVAFYAGLL 457
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
624-833 1.08e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 112.79  E-value: 1.08e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 624 IKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYL 701
Cdd:COG0457    1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 702 NTGIILMNQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLFHEQGHYEDALMVYKEAIQKMPRQfapQSL 781
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALEL---DPDDAEAL--------YNLGLALLELGRYDEAIEAYERALELDPDD---ADA 146
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 697848504 782 YNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAE 833
Cdd:COG0457  147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
782-955 4.36e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.67  E-value: 4.36e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 782 YNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEES 861
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 862 RLieaaemakkaaeldntefdvvfnaahmlrqaslnDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLA 941
Cdd:COG0457   91 RY----------------------------------EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERA 136
                        170
                 ....*....|....
gi 697848504 942 LQLKPDDVITQSNL 955
Cdd:COG0457  137 LELDPDDADALYNL 150
ArnT COG1807
PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA ...
214-375 5.47e-07

PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 441412 [Multi-domain]  Cd Length: 309  Bit Score: 52.70  E-value: 5.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 214 AVGGMDPWGYHLVNVLLHAAVTGLFTNFSRILFGDGYWtLIAGLLFASHPIHteAVAGIVGRADIGACLFFLLSLMCYVK 293
Cdd:COG1807   77 KLFGVSEFAARLPSALLGLLTVLLVYLLARRLFGRRAA-LLAALLLLTSPLL--LLFGRLATPDALLLLFWTLALYALLR 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 294 HCSTRGsspstWGWILGAGLCAGCSMLWKEQGVTVLAISAvydifvfhrlkmhqIISALCKRKNLTLFFSIGLLTSWGTA 373
Cdd:COG1807  154 ALERRR-----LRWLLLAGLALGLGFLTKGPVALLLPGLA--------------LLLYLLLTRRWRRLRRLRLLLGLLLA 214

                 ..
gi 697848504 374 LL 375
Cdd:COG1807  215 LL 216
 
Name Accession Description Interval E-value
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
383-457 1.40e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 134.96  E-value: 1.40e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697848504  383 GNKPPSFSNSDNPAADSDSFLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKAVSDWRNLHTVAFYAGLL 457
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
624-833 1.08e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 112.79  E-value: 1.08e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 624 IKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYL 701
Cdd:COG0457    1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 702 NTGIILMNQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLFHEQGHYEDALMVYKEAIQKMPRQfapQSL 781
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALEL---DPDDAEAL--------YNLGLALLELGRYDEAIEAYERALELDPDD---ADA 146
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 697848504 782 YNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAE 833
Cdd:COG0457  147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
782-955 4.36e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.67  E-value: 4.36e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 782 YNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEES 861
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 862 RLieaaemakkaaeldntefdvvfnaahmlrqaslnDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLA 941
Cdd:COG0457   91 RY----------------------------------EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERA 136
                        170
                 ....*....|....
gi 697848504 942 LQLKPDDVITQSNL 955
Cdd:COG0457  137 LELDPDDADALYNL 150
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
628-957 3.92e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 77.05  E-value: 3.92e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  628 PAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIIL 707
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  708 MNQGKTEEARRTFlkcSEIPDENLKDPHAHKSsvtsclynLGKLFHEQGHYEDALMVYKEAIQKmprqfAPQSLYNM-MG 786
Cdd:TIGR02917 680 LAAKRTESAKKIA---KSLQKQHPKAALGFEL--------EGDLYLRQKDYPAAIQAYRKALKR-----APSSQNAIkLH 743
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  787 EAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPtkgncymhygqflleesrliea 866
Cdd:TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP---------------------- 801
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  867 aemakkaaelDNTefdVVFNAAHMLRQASLNDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKP 946
Cdd:TIGR02917 802 ----------DNA---VVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868
                         330
                  ....*....|.
gi 697848504  947 DDVITQSNLRK 957
Cdd:TIGR02917 869 EAAAIRYHLAL 879
TPR_12 pfam13424
Tetratricopeptide repeat;
696-770 3.94e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 3.94e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697848504  696 LASAYLNTGIILMNQGKTEEARRTFLKCSEIpDENLKDPHAHKSSVTscLYNLGKLFHEQGHYEDALMVYKEAIQ 770
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEI-ARRLLGPDHPLTATT--LLNLGRLYLELGRYEEALELLERALA 73
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
646-811 2.86e-07

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 51.60  E-value: 2.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 646 SEAESAYrnaLYYRSNMAdmlynlgllLQENSRFSEALHYYK--LAIGSRPTLASAYL-NTGIILMNQGKTEEARRTFLK 722
Cdd:PRK02603  30 KKAKEAF---VYYRDGMS---------AQADGEYAEALENYEeaLKLEEDPNDRSYILyNMGIIYASNGEHDKALEYYHQ 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 723 CSEipdENLKDPhahkssvtSCLYNLGKLFHEQGhyedalmvykEAIQKMPRQFAPQSLYNMMGEAYMRMSRL-P----E 797
Cdd:PRK02603  98 ALE---LNPKQP--------SALNNIAVIYHKRG----------EKAEEAGDQDEAEALFDKAAEYWKQAIRLaPnnyiE 156
                        170
                 ....*....|....
gi 697848504 798 AERWYMESLRSKSD 811
Cdd:PRK02603 157 AQNWLKTTGRSNID 170
ArnT COG1807
PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA ...
214-375 5.47e-07

PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441412 [Multi-domain]  Cd Length: 309  Bit Score: 52.70  E-value: 5.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 214 AVGGMDPWGYHLVNVLLHAAVTGLFTNFSRILFGDGYWtLIAGLLFASHPIHteAVAGIVGRADIGACLFFLLSLMCYVK 293
Cdd:COG1807   77 KLFGVSEFAARLPSALLGLLTVLLVYLLARRLFGRRAA-LLAALLLLTSPLL--LLFGRLATPDALLLLFWTLALYALLR 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 294 HCSTRGsspstWGWILGAGLCAGCSMLWKEQGVTVLAISAvydifvfhrlkmhqIISALCKRKNLTLFFSIGLLTSWGTA 373
Cdd:COG1807  154 ALERRR-----LRWLLLAGLALGLGFLTKGPVALLLPGLA--------------LLLYLLLTRRWRRLRRLRLLLGLLLA 214

                 ..
gi 697848504 374 LL 375
Cdd:COG1807  215 LL 216
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
666-842 4.84e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 49.55  E-value: 4.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 666 LYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAhksSVTSCL 745
Cdd:cd24142    3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL------DPDG---GYEKYL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 746 YnLGKLfhEQG-----HYEDALMVYKEAIQKMPRQFAPQSLY-----NMMGEAYMRMSRL--------PEAER---WYME 804
Cdd:cd24142   74 Y-LGQL--SGGeealqYYEKGIEILEEELQALQAASAEAEEEaeelkRKLSSALCALAEIymtdlcdePDAEQrceELIT 150
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 697848504 805 S-LRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQL 842
Cdd:cd24142  151 KaLELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
TPR_12 pfam13424
Tetratricopeptide repeat;
886-947 1.09e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.52  E-value: 1.09e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  886 NAAHMLRQASLNDEAEKYYEMAAGL--------RPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKPD 947
Cdd:pfam13424   8 NLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
744-773 3.22e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 3.22e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 697848504   744 CLYNLGKLFHEQGHYEDALMVYKEAIQKMP 773
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
 
Name Accession Description Interval E-value
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
383-457 1.40e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 134.96  E-value: 1.40e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697848504  383 GNKPPSFSNSDNPAADSDSFLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKAVSDWRNLHTVAFYAGLL 457
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
624-833 1.08e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 112.79  E-value: 1.08e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 624 IKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYL 701
Cdd:COG0457    1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 702 NTGIILMNQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLFHEQGHYEDALMVYKEAIQKMPRQfapQSL 781
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALEL---DPDDAEAL--------YNLGLALLELGRYDEAIEAYERALELDPDD---ADA 146
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 697848504 782 YNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAE 833
Cdd:COG0457  147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
608-844 1.07e-25

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 107.89  E-value: 1.07e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 608 VRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHY 685
Cdd:COG2956   19 LLNGQPDKAIDLLEEALELDPetVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEEL 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 686 YKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENlkdPHAHkssvtsclYNLGKLFHEQGHYEDALMVY 765
Cdd:COG2956   99 LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN---AHAY--------CELAELYLEQGDYDEAIEAL 167
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 697848504 766 KEAIQKMPRQFAPqslYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDP 844
Cdd:COG2956  168 EKALKLDPDCARA---LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
609-843 2.45e-25

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 106.74  E-value: 2.45e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 609 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYY 686
Cdd:COG2956   54 RRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVL 133
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 687 KLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLFHEQGHYEDALMVYK 766
Cdd:COG2956  134 ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL------DPDCARA-----LLLLAELYLEQGDYEEAIAALE 202
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 697848504 767 EAIQKMPRQFapqSLYNMMGEAYMRMSRLPEAERWYMESLRSKSDhIPAHLTYGKLLALTGRKSEAEKYFVKAIQLD 843
Cdd:COG2956  203 RALEQDPDYL---PALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
694-944 3.21e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 105.47  E-value: 3.21e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 694 PTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLFHEQGHYEDALMVYKEAIQKMP 773
Cdd:COG0457    5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEA-----LYNLGLAYLRLGRYEEALADYEQALELDP 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 774 RQFApqsLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNCYMHY 853
Cdd:COG0457   74 DDAE---ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 854 GQFLLEESRL---IEAAEMAKKAAELDNTEFDVVFNAAHMLRQASLNDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGK 930
Cdd:COG0457  151 GIALEKLGRYeeaLELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
                        250
                 ....*....|....
gi 697848504 931 LKEAEENYLLALQL 944
Cdd:COG0457  231 LALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
609-770 5.07e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 102.01  E-value: 5.07e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 609 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYY 686
Cdd:COG0457   20 RLGRYEEAIEDYEKALELDPddAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDY 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 687 KLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLFHEQGHYEDALMVYK 766
Cdd:COG0457  100 DKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL---DPDDADAL--------YNLGIALEKLGRYEEALELLE 168

                 ....
gi 697848504 767 EAIQ 770
Cdd:COG0457  169 KLEA 172
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
667-943 5.03e-23

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 100.19  E-value: 5.03e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 667 YNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKDphahkssvtscLY 746
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA-----------LL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 747 NLGKLFHEQGHYEDALMVYKEAIQKMPrqFAPQSLYNMmGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALT 826
Cdd:COG2956   81 ELAQDYLKAGLLDRAEELLEKLLELDP--DDAEALRLL-AEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 827 GRKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEESRLIEAAEMAKKAAELDNTEFDVVFNAAHMLRQASLNDEAEKYYEM 906
Cdd:COG2956  158 GDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRK 237
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 697848504 907 AAGLRPNVSIFLMNFGAILHLNGkLKEAEENYLLALQ 943
Cdd:COG2956  238 ALELDPSDDLLLALADLLERKEG-LEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
696-958 1.10e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 99.03  E-value: 1.10e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 696 LASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKdphAHkssvtsclYNLGKLFHEQGHYEDALMVYKEAIQKMPRQ 775
Cdd:COG2956    7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AH--------LALGNLYRRRGEYDRAIRIHQKLLERDPDR 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 776 FApqsLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQ 855
Cdd:COG2956   76 AE---ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAE 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 856 FLLEESRLieaaemakkaaeldntefdvvfnaahmlrqaslnDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAE 935
Cdd:COG2956  153 LYLEQGDY----------------------------------DEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAI 198
                        250       260
                 ....*....|....*....|...
gi 697848504 936 ENYLLALQLKPDDVITQSNLRKL 958
Cdd:COG2956  199 AALERALEQDPDYLPALPRLAEL 221
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
609-732 8.84e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 101.22  E-value: 8.84e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 609 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYY 686
Cdd:COG3914   90 ALGRYEEALALYRRALALNPdnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 697848504 687 KLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLK 732
Cdd:COG3914  170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
647-932 3.06e-20

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 96.22  E-value: 3.06e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 647 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 726
Cdd:COG3914   28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 727 pdenlkDPHAHKSsvtscLYNLGKLFHEQGHYEDALMVYKEAIQKMPRQFApqsLYNMMGEAYMRMSRLPEAERWYMESL 806
Cdd:COG3914  108 ------NPDNAEA-----LFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEEAIAALRRAL 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 807 RSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEESRLIEAAEMAKKAAELDNTEFDVVFN 886
Cdd:COG3914  174 ELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPF 253
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 697848504 887 AAHMLRQASLNDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLK 932
Cdd:COG3914  254 ALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPPNPRDPDRKLR 299
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
697-844 5.09e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 87.17  E-value: 5.09e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 697 ASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENlkdPHAhkssvtscLYNLGKLFHEQGHYEDALMVYKEAIQKMPRQF 776
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDN---PEA--------FALLGEILLQLGDLDEAIVLLHEALELDPDEP 72
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 697848504 777 ApqsLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDP 844
Cdd:COG4783   73 E---ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
635-782 4.81e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 92.36  E-value: 4.81e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 635 LGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTE 714
Cdd:COG3914   84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 697848504 715 EARRTFLKCSEI-PDenlkDPHAHkssvtsclYNLGKLFHEQGHYEDALMVYKEAIQKMPRQFAPQSLY 782
Cdd:COG3914  164 EAIAALRRALELdPD----NAEAL--------NNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
782-955 4.36e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.67  E-value: 4.36e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 782 YNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEES 861
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 862 RLieaaemakkaaeldntefdvvfnaahmlrqaslnDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLA 941
Cdd:COG0457   91 RY----------------------------------EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERA 136
                        170
                 ....*....|....
gi 697848504 942 LQLKPDDVITQSNL 955
Cdd:COG0457  137 LELDPDDADALYNL 150
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
660-812 3.37e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 79.08  E-value: 3.37e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 660 SNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI-PDEnlkdPHAHk 738
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELdPDE----PEAR- 75
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 697848504 739 ssvtsclYNLGKLFHEQGHYEDALMVYKEAIQKMPRQfaPQSLYNmMGEAYMRMSRLPEAERWYMESLRSKSDH 812
Cdd:COG4783   76 -------LNLGLALLKAGDYDEALALLEKALKLDPEH--PEAYLR-LARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
668-911 1.13e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 84.66  E-value: 1.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 668 NLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLkcSEIPDENLKDPHAHKSSVTSCLYN 747
Cdd:COG3914    6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAAL--LALAAGEAAAAAAALLLLAALLEL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 748 LGKLFHEQGHYEDALMVYKEAIQKMPRQFApqsLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTG 827
Cdd:COG3914   84 AALLLQALGRYEEALALYRRALALNPDNAE---ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 828 RKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEESRLIEAAEMAKKAAELDNTEFDVVFNAAHMLRQASLNDEAEKYYEMA 907
Cdd:COG3914  161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240

                 ....
gi 697848504 908 AGLR 911
Cdd:COG3914  241 AALA 244
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
729-955 3.45e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 83.12  E-value: 3.45e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 729 ENLKDPHAHKSSVTSCLYNLGKLFHEQGHYEDALMVYKEAIQKMPRQFAPQSLYNMMGEAYMRMSRLPEAERWYMESLRS 808
Cdd:COG3914   28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 809 KSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEESRLieaaemakkaaeldntefdvvfnaa 888
Cdd:COG3914  108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL------------------------- 162
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 697848504 889 hmlrqaslnDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKPDDVITQSNL 955
Cdd:COG3914  163 ---------EEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
745-863 6.46e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 75.61  E-value: 6.46e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 745 LYNLGKLFHEQGHYEDALMVYKEAIQKMPRQFApqsLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLA 824
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDNPE---AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 697848504 825 LTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEESRL 863
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
777-948 1.78e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 74.07  E-value: 1.78e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 777 APQSLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTkgncymhygqf 856
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----------- 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 857 lleesrlieaaemakkaaeldntEFDVVFNAAHMLRQASLNDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEE 936
Cdd:COG4783   71 -----------------------EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
                        170
                 ....*....|..
gi 697848504 937 NYLLALQLKPDD 948
Cdd:COG4783  128 ALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
629-775 3.62e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 73.30  E-value: 3.62e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 629 AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILM 708
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 697848504 709 NQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLFHEQGHYEDALMVYKEAIQKMPRQ 775
Cdd:COG4783   84 KAGDYDEALALLEKALKL---DPEHPEAY--------LRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
745-844 1.72e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 71.19  E-value: 1.72e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 745 LYNLGKLFHEQGHYEDALMVYKEAIQKMPRQfapQSLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLA 824
Cdd:COG4235   20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDN---ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
                         90       100
                 ....*....|....*....|
gi 697848504 825 LTGRKSEAEKYFVKAIQLDP 844
Cdd:COG4235   97 QQGDYAEAIAAWQKLLALLP 116
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
628-957 3.92e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 77.05  E-value: 3.92e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  628 PAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIIL 707
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  708 MNQGKTEEARRTFlkcSEIPDENLKDPHAHKSsvtsclynLGKLFHEQGHYEDALMVYKEAIQKmprqfAPQSLYNM-MG 786
Cdd:TIGR02917 680 LAAKRTESAKKIA---KSLQKQHPKAALGFEL--------EGDLYLRQKDYPAAIQAYRKALKR-----APSSQNAIkLH 743
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  787 EAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPtkgncymhygqflleesrliea 866
Cdd:TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP---------------------- 801
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  867 aemakkaaelDNTefdVVFNAAHMLRQASLNDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKP 946
Cdd:TIGR02917 802 ----------DNA---VVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868
                         330
                  ....*....|.
gi 697848504  947 DDVITQSNLRK 957
Cdd:TIGR02917 869 EAAAIRYHLAL 879
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
609-730 6.98e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 69.45  E-value: 6.98e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 609 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYY 686
Cdd:COG4783   16 LAGDYDEAEALLEKALELDPdnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALL 95
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 697848504 687 KLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDEN 730
Cdd:COG4783   96 EKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
751-844 8.48e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.99  E-value: 8.48e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 751 LFHEQGHYEDALMVYKEAIQKMPRQFApqsLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKS 830
Cdd:COG5010   63 LYNKLGDFEESLALLEQALQLDPNNPE---LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
                         90
                 ....*....|....
gi 697848504 831 EAEKYFVKAIQLDP 844
Cdd:COG5010  140 EAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
609-718 1.05e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.41  E-value: 1.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 609 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYY 686
Cdd:COG3914  124 ALGRLEEALAALRRALALNPdfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAY 203
                         90       100       110
                 ....*....|....*....|....*....|..
gi 697848504 687 KLAIGSRPTLASAYLNTGIILMNQGKTEEARR 718
Cdd:COG3914  204 RRALELDPDNADAHSNLLFALRQACDWEVYDR 235
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
647-788 2.44e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 67.72  E-value: 2.44e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 647 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 726
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697848504 727 -PDenlkDPHAhkssvtscLYNLGKLFHEQGHYEDALMVYKEAIQKMPRQFAPQSLYNMMGEA 788
Cdd:COG4235   81 dPD----NPEA--------LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
629-770 6.07e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 69.17  E-value: 6.07e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 629 AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILM 708
Cdd:COG4785   73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 697848504 709 NQGKTEEARRTFLKCSEIPDEN------------LKDPHAHKSSVTSclyNLGKLFHEQGHYEDALMVYKEAIQ 770
Cdd:COG4785  153 YLGRYELAIADLEKALELDPNDperalwlylaerKLDPEKALALLLE---DWATAYLLQGDTEEARELFKLALA 223
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
751-844 1.03e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.81  E-value: 1.03e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 751 LFHEQGHYEDALMVYKEAIQKMPRQFApqsLYNMMGEAYMRMSRLPEAERwYMESLRSKSDHIPAHLTYGKLLALTGRKS 830
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNAD---ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76
                         90
                 ....*....|....
gi 697848504 831 EAEKYFVKAIQLDP 844
Cdd:COG3063   77 EALAYLERALELDP 90
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
596-722 1.57e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 66.14  E-value: 1.57e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 596 AALIFFYGLKTVVRNGDWQNEEMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQE 675
Cdd:COG5010   21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 697848504 676 NSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLK 722
Cdd:COG5010  101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
620-730 5.84e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.87  E-value: 5.84e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 620 YRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLA 697
Cdd:COG4235    6 LRQALAANPndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
                         90       100       110
                 ....*....|....*....|....*....|...
gi 697848504 698 SAYLNTGIILMNQGKTEEARRTFLKCSEIPDEN 730
Cdd:COG4235   86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
628-958 1.93e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 68.19  E-value: 1.93e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  628 PAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEA----------------LHYYKLAI- 690
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAekhadallkkapnsplAHYLKALVd 271
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  691 -------GSRPTLASA------YLNT----GIILMNQGKTEEAR---RTFLKcsEIPDenlkDPHAHKSSVTSCLynlgk 750
Cdd:TIGR02917 272 fqkknyeDARETLQDAlksapeYLPAlllaGASEYQLGNLEQAYqylNQILK--YAPN----SHQARRLLASIQL----- 340
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  751 lfhEQGHYEDALMVYKEAIQKMPRQFApqsLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKS 830
Cdd:TIGR02917 341 ---RLGRVDEAIATLSPALGLDPDDPA---ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  831 EAEKYFVKAIQLDPTKGNcymhyGQFLLEESrlieaaemakkaaELDNTEFDVVFNAAHMLrQASLNDEAEKYYEMaagl 910
Cdd:TIGR02917 415 EAIADLETAAQLDPELGR-----ADLLLILS-------------YLRSGQFDKALAAAKKL-EKKQPDNASLHNLL---- 471
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 697848504  911 rpnvsiflmnfGAILHLNGKLKEAEENYLLALQLKPDDVITQSNLRKL 958
Cdd:TIGR02917 472 -----------GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
648-808 2.01e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.06  E-value: 2.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 648 AESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIp 727
Cdd:COG5010    5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL- 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 728 deNLKDPHAHkssvtsclYNLGKLFHEQGHYEDALMVYKEAIQKMPRQfaPQSLYNmMGEAYMRMSRLPEAERWYMESLR 807
Cdd:COG5010   84 --DPNNPELY--------YNLALLYSRSGDKDEAKEYYEKALALSPDN--PNAYSN-LAALLLSLGQDDEAKAALQRALG 150

                 .
gi 697848504 808 S 808
Cdd:COG5010  151 T 151
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
638-732 2.08e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.95  E-value: 2.08e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 638 VLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKlAIGSRPTLASAYLNTGIILMNQGKTEEAR 717
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEAL 79
                         90
                 ....*....|....*
gi 697848504 718 RTFLKCSEIPDENLK 732
Cdd:COG3063   80 AYLERALELDPSALR 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
647-775 3.80e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 62.29  E-value: 3.80e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 647 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 726
Cdd:COG5010   38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 697848504 727 PDENlkdPHAHkssvtsclYNLGKLFHEQGHYEDALMVYKEAIQKMPRQ 775
Cdd:COG5010  118 SPDN---PNAY--------SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
672-774 2.73e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.87  E-value: 2.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 672 LLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRtFLKCSEIpdeNLKDPHAhkssvtscLYNLGKL 751
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL---DPNNAEA--------LLNLAEL 68
                         90       100
                 ....*....|....*....|...
gi 697848504 752 FHEQGHYEDALMVYKEAIQKMPR 774
Cdd:COG3063   69 LLELGDYDEALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
777-863 5.03e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.20  E-value: 5.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 777 APQSLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQF 856
Cdd:COG5010   52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131

                 ....*..
gi 697848504 857 LLEESRL 863
Cdd:COG5010  132 LLSLGQD 138
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
760-862 7.09e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.71  E-value: 7.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 760 DALMVYKEAIQKMPRQfaPQSLYnMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKA 839
Cdd:COG4235    1 EAIARLRQALAANPND--AEGWL-LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
                         90       100
                 ....*....|....*....|...
gi 697848504 840 IQLDPTKGNCYMHYGQFLLEESR 862
Cdd:COG4235   78 LALDPDNPEALYLLGLAAFQQGD 100
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
609-696 7.10e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 56.72  E-value: 7.10e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 609 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEsAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYY 686
Cdd:COG3063    4 KLGDLEEAEEYYEKALELDPdnADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
                         90
                 ....*....|
gi 697848504 687 KLAIGSRPTL 696
Cdd:COG3063   83 ERALELDPSA 92
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
621-955 1.19e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.41  E-value: 1.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  621 RSGIKVNPAKA--WGNLGNVLKSQSKISEAESAYRNAL-----YY--RSNMADMLYNLGLLLQENSRFSEALHYYKLAIG 691
Cdd:TIGR02917 455 KKLEKKQPDNAslHNLLGAIYLGKGDLAKAREAFEKALsiepdFFpaAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR 534
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  692 SRPTLASAYLNTGIILMNQG---------KTEEARRTFLKCSEIPDENLKDP--------HAHKSSVtSCLYNLGKLFHE 754
Cdd:TIGR02917 535 AILALAGLYLRTGNEEEAVAwlekaaelnPQEIEPALALAQYYLGKGQLKKAlailneaaDAAPDSP-EAWLMLGRAQLA 613
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  755 QGHYEDALMVYKEAIQKMPRQFAPQSLynmMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEK 834
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLL---LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  835 ---YFVKAIQLDPTK----GNCYMHYGQFlleeSRLIEAAEMAKKAAELDNTefdvVFNAAHMLRQASLNDEAEKYYEMA 907
Cdd:TIGR02917 691 iakSLQKQHPKAALGfeleGDLYLRQKDY----PAAIQAYRKALKRAPSSQN----AIKLHRALLASGNTAEAVKTLEAW 762
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 697848504  908 AGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKPDDVITQSNL 955
Cdd:TIGR02917 763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNL 810
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
669-947 1.46e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.02  E-value: 1.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  669 LGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENlkdPHAHKSSVTSCLynl 748
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL---GRADLLLILSYL--- 442
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  749 gklfhEQGHYEDALMVYKEAIQKMPRQfapQSLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGR 828
Cdd:TIGR02917 443 -----RSGQFDKALAAAKKLEKKQPDN---ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  829 KSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEESRLIEAAEMAKKAAELDNTEFDVVFN-AAHMLRQASLNDEAEKYYEMA 907
Cdd:TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALAlAQYYLGKGQLKKALAILNEAA 594
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 697848504  908 AGLRPNVSIFLMnFGAILHLNGKLKEAEENYLLALQLKPD 947
Cdd:TIGR02917 595 DAAPDSPEAWLM-LGRAQLAAGDLNKAVSSFKKLLALQPD 633
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
788-863 1.52e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.95  E-value: 1.52e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 697848504 788 AYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFvKAIQLDPTKGNCYMHYGQFLLEESRL 863
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGDY 75
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
754-844 1.53e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 56.54  E-value: 1.53e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 754 EQGHYEDALMVYKEAIQKMPR-QFAPQSLYnMMGEAYMRMSRLPEAERWYMESLRSKSDHIP---AHLTYGKLLALTGRK 829
Cdd:COG1729    5 KAGDYDEAIAAFKAFLKRYPNsPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDY 83
                         90
                 ....*....|....*
gi 697848504 830 SEAEKYFVKAIQLDP 844
Cdd:COG1729   84 DKARATLEELIKKYP 98
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
706-811 2.16e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.56  E-value: 2.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 706 ILMNQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLFHEQGHYEDALmVYKEAIQKMPRQfaPQSLYNMm 785
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALEL---DPDNADAL--------NNLGLLLLEQGRYDEAI-ALEKALKLDPNN--AEALLNL- 65
                         90       100
                 ....*....|....*....|....*.
gi 697848504 786 GEAYMRMSRLPEAERWYMESLRSKSD 811
Cdd:COG3063   66 AELLLELGDYDEALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
850-955 3.71e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.51  E-value: 3.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 850 YMHYGQFLLEESRLIEAAEMAKKAAELDNTEFDVVFNAAHMLRQaslNDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNG 929
Cdd:COG5010   26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGD---FEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
                         90       100
                 ....*....|....*....|....*.
gi 697848504 930 KLKEAEENYLLALQLKPDDVITQSNL 955
Cdd:COG5010  103 DKDEAKEYYEKALALSPDNPNAYSNL 128
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
609-694 3.96e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.51  E-value: 3.96e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 609 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYY 686
Cdd:COG5010   66 KLGDFEESLALLEQALQLDPnnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAAL 145

                 ....*...
gi 697848504 687 KLAIGSRP 694
Cdd:COG5010  146 QRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
648-841 4.83e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 57.62  E-value: 4.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 648 AESAYRNALYYRsNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI- 726
Cdd:COG4785   59 AAERIDRALALP-DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELd 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 727 PDenlkDPHAHkssvtsclYNLGKLFHEQGHYEDALMVYKEAIQKMPrqfapqslynmmgeaymrmsRLPEAERW-YMES 805
Cdd:COG4785  138 PD----YAYAY--------LNRGIALYYLGRYELAIADLEKALELDP--------------------NDPERALWlYLAE 185
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 697848504 806 LRSKSDHIPAHLT--YGKLLALTGRKSEAEKYFVKAIQ 841
Cdd:COG4785  186 RKLDPEKALALLLedWATAYLLQGDTEEARELFKLALA 223
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
705-804 9.52e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 54.23  E-value: 9.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 705 IILMNQGKTEEARRTFLK-CSEIPDENLKDphahkssvtSCLYNLGKLFHEQGHYEDALMVYKEAIQKMPR-QFAPQSLY 782
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAfLKRYPNSPLAP---------DALYWLGEAYYALGDYDEAAEAFEKLLKRYPDsPKAPDALL 71
                         90       100
                 ....*....|....*....|..
gi 697848504 783 nMMGEAYMRMSRLPEAERWYME 804
Cdd:COG1729   72 -KLGLSYLELGDYDKARATLEE 92
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
797-948 1.12e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 1.12e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 797 EAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPtkgncymhygqflleesrlieaaemakkaael 876
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP-------------------------------- 48
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 697848504 877 DNTefDVVFNAAHMLRQASLNDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKPDD 948
Cdd:COG4235   49 DNA--DALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
TPR_12 pfam13424
Tetratricopeptide repeat;
696-770 3.94e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 3.94e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697848504  696 LASAYLNTGIILMNQGKTEEARRTFLKCSEIpDENLKDPHAHKSSVTscLYNLGKLFHEQGHYEDALMVYKEAIQ 770
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEI-ARRLLGPDHPLTATT--LLNLGRLYLELGRYEEALELLERALA 73
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
787-946 5.22e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.43  E-value: 5.22e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 787 EAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEESRLiea 866
Cdd:COG5010   28 EAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDK--- 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 867 aemakkaaeldntefdvvfnaahmlrqaslnDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKP 946
Cdd:COG5010  105 -------------------------------DEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
675-773 5.31e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.92  E-value: 5.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 675 ENSRFSEALHYYKLAIGSRPT---LASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKDPHAhkssvtscLYNLGKL 751
Cdd:COG1729    5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA--------LLKLGLS 76
                         90       100
                 ....*....|....*....|..
gi 697848504 752 FHEQGHYEDALMVYKEAIQKMP 773
Cdd:COG1729   77 YLELGDYDKARATLEELIKKYP 98
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
681-817 1.13e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.55  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 681 EALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI-PDenlkDPHAhkssvtscLYNLGKLFHEQGHYE 759
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLdPD----NADA--------LLDLAEALLAAGDTE 68
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 697848504 760 DALMVYKEAIQKMPRQfaPQSLYnMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHL 817
Cdd:COG4235   69 EAEELLERALALDPDN--PEALY-LLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
822-947 1.58e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.17  E-value: 1.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 822 LLALTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEESRLieaaemakkaaeldntefdvvfnaahmlrqaslnDEAE 901
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY----------------------------------DEAI 46
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 697848504 902 KYyEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKPD 947
Cdd:COG3063   47 AL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
646-811 2.86e-07

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 51.60  E-value: 2.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 646 SEAESAYrnaLYYRSNMAdmlynlgllLQENSRFSEALHYYK--LAIGSRPTLASAYL-NTGIILMNQGKTEEARRTFLK 722
Cdd:PRK02603  30 KKAKEAF---VYYRDGMS---------AQADGEYAEALENYEeaLKLEEDPNDRSYILyNMGIIYASNGEHDKALEYYHQ 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 723 CSEipdENLKDPhahkssvtSCLYNLGKLFHEQGhyedalmvykEAIQKMPRQFAPQSLYNMMGEAYMRMSRL-P----E 797
Cdd:PRK02603  98 ALE---LNPKQP--------SALNNIAVIYHKRG----------EKAEEAGDQDEAEALFDKAAEYWKQAIRLaPnnyiE 156
                        170
                 ....*....|....
gi 697848504 798 AERWYMESLRSKSD 811
Cdd:PRK02603 157 AQNWLKTTGRSNID 170
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
814-958 3.45e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 3.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 814 PAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNCYMHYGQFLLEESRLieaaemakkaaeldntefdvvfnaahmlrq 893
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDL------------------------------ 54
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697848504 894 aslnDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKPDDVITQSNLRKL 958
Cdd:COG4783   55 ----DEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
891-955 5.08e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.63  E-value: 5.08e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697848504 891 LRQASLNDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEEnYLLALQLKPDDVITQSNL 955
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65
ArnT COG1807
PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA ...
214-375 5.47e-07

PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441412 [Multi-domain]  Cd Length: 309  Bit Score: 52.70  E-value: 5.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 214 AVGGMDPWGYHLVNVLLHAAVTGLFTNFSRILFGDGYWtLIAGLLFASHPIHteAVAGIVGRADIGACLFFLLSLMCYVK 293
Cdd:COG1807   77 KLFGVSEFAARLPSALLGLLTVLLVYLLARRLFGRRAA-LLAALLLLTSPLL--LLFGRLATPDALLLLFWTLALYALLR 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 294 HCSTRGsspstWGWILGAGLCAGCSMLWKEQGVTVLAISAvydifvfhrlkmhqIISALCKRKNLTLFFSIGLLTSWGTA 373
Cdd:COG1807  154 ALERRR-----LRWLLLAGLALGLGFLTKGPVALLLPGLA--------------LLLYLLLTRRWRRLRRLRLLLGLLLA 214

                 ..
gi 697848504 374 LL 375
Cdd:COG1807  215 LL 216
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
610-853 7.95e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.16  E-value: 7.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  610 NGDWQNEEMLYRSGIKVNPAK--AWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYK 687
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSalALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  688 LAIGSRPTLASAYLNTGIILMNQGKTEEAR---RTFLKCSEIPDENLKDPHAH---------------------KSSVTs 743
Cdd:TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIqayRKALKRAPSSQNAIKLHRALlasgntaeavktleawlkthpNDAVL- 772
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  744 cLYNLGKLFHEQGHYEDALMVYKEAIQKMPRQfaPQSLYNMmgeAYMRMSRL-PEAERWYMESLRSKSDhIPAHL-TYGK 821
Cdd:TIGR02917 773 -RTALAELYLAQKDYDKAIKHYQTVVKKAPDN--AVVLNNL---AWLYLELKdPRALEYAERALKLAPN-IPAILdTLGW 845
                         250       260       270
                  ....*....|....*....|....*....|..
gi 697848504  822 LLALTGRKSEAEKYFVKAIQLDPTKGNCYMHY 853
Cdd:TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
642-720 8.87e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.45  E-value: 8.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 642 QSKISEAESAYRNAL--YYRSNMA-DMLYNLGLLLQENSRFSEALHYYKLAIGSRPT---LASAYLNTGIILMNQGKTEE 715
Cdd:COG1729    6 AGDYDEAIAAFKAFLkrYPNSPLApDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDK 85

                 ....*
gi 697848504 716 ARRTF 720
Cdd:COG1729   86 ARATL 90
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
647-947 3.13e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.24  E-value: 3.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  647 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 726
Cdd:TIGR02917 143 LAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  727 PDENLKDphahkssvtscLYNLGKLFHEQGHYEDAlMVYKEAIqkmpRQFAPQSLYNMMGEAYMRMSR--LPEAERWYME 804
Cdd:TIGR02917 223 RPNNIAV-----------LLALATILIEAGEFEEA-EKHADAL----LKKAPNSPLAHYLKALVDFQKknYEDARETLQD 286
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  805 SLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKgncymHYGQFLLEESRLIEAAEMAKKAA---ELDNTEF 881
Cdd:TIGR02917 287 ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNS-----HQARRLLASIQLRLGRVDEAIATlspALGLDPD 361
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  882 D-VVFNAAHM--LRQASLnDEAEKYYEMAAGLRPNVSIFLMNFGaILHL-NGKLKEAEENYLLALQLKPD 947
Cdd:TIGR02917 362 DpAALSLLGEayLALGDF-EKAAEYLAKATELDPENAAARTQLG-ISKLsQGDPSEAIADLETAAQLDPE 429
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
666-842 4.84e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 49.55  E-value: 4.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 666 LYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAhksSVTSCL 745
Cdd:cd24142    3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL------DPDG---GYEKYL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 746 YnLGKLfhEQG-----HYEDALMVYKEAIQKMPRQFAPQSLY-----NMMGEAYMRMSRL--------PEAER---WYME 804
Cdd:cd24142   74 Y-LGQL--SGGeealqYYEKGIEILEEELQALQAASAEAEEEaeelkRKLSSALCALAEIymtdlcdePDAEQrceELIT 150
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 697848504 805 S-LRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQL 842
Cdd:cd24142  151 KaLELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
642-947 5.08e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.47  E-value: 5.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  642 QSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFSEA---------LHYYKLAIgsRPTLASAYLNtgiilmnQGK 712
Cdd:TIGR02917  35 KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAekelrkalsLGYPKNQV--LPLLARAYLL-------QGK 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  713 TEEARRTFLKCSEIPDENLKDPHAHkssVTSCLYNLGKLFHEQGHYEDALmvykeaiqkmprQFAPQSLYNMMGEAYMRM 792
Cdd:TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLAL---RGLAYLGLGQLELAQKSYEQAL------------AIDPRSLYAKLGLAQLAL 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  793 S--RLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPTKGNcymhygqflleesrlieaaema 870
Cdd:TIGR02917 171 AenRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIA---------------------- 228
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 697848504  871 kkaaeldntefdVVFNAAHMLRQASLNDEAEKYYEMAAGLRPNvSIFLMNFGAILHL-NGKLKEAEENYLLALQLKPD 947
Cdd:TIGR02917 229 ------------VLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFqKKNYEDARETLQDALKSAPE 293
TPR_12 pfam13424
Tetratricopeptide repeat;
662-726 5.73e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 5.73e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697848504  662 MADMLYNLGLLLQENSRFSEALHYYKLAI--------GSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 726
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
680-911 2.55e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 48.06  E-value: 2.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  680 SEALHYYKLAIGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKdPHAHkssvtsclynLGKLFHEQGHYE 759
Cdd:TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF-SHIQ----------LGVTQYKEGSIA 450
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  760 DALMVYKEAIQKMPRqfAPQsLYNMMGEAYMRMSRLPEAERWYMES--LRSKSDHIPAHLT--YGKLLALTGRK---SEA 832
Cdd:TIGR00990 451 SSMATFRRCKKNFPE--APD-VYNYYGELLLDQNKFDEAIEKFDTAieLEKETKPMYMNVLplINKALALFQWKqdfIEA 527
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  833 EKYFVKAIQLDPTKGNCYMHYGQFLLEESRLIEAAEMAKKAAELDNTEFDVV--FNAAHMLR-----QASLNDEAEKYYE 905
Cdd:TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVqaISYAEATRtqiqvQEDYPVLASKLQG 607

                  ....*.
gi 697848504  906 MAAGLR 911
Cdd:TIGR00990 608 MLGGLR 613
TPR_12 pfam13424
Tetratricopeptide repeat;
745-807 4.95e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 4.95e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 697848504  745 LYNLGKLFHEQGHYEDALMVYKEAIQKMPRQFAPQSL-----YNMMGEAYMRMSRLPEAERWYMESLR 807
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltattLLNLGRLYLELGRYEEALELLERALA 73
ycf3 CHL00033
photosystem I assembly protein Ycf3
641-725 5.02e-05

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 44.61  E-value: 5.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 641 SQSKISEAESAYRNALYYRSNMAD---MLYNLGLLLQENSRFSEALHYYKLAIGSRPTLASAYLNTGII-------LMNQ 710
Cdd:CHL00033  47 SEGEYAEALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIchyrgeqAIEQ 126
                         90
                 ....*....|....*
gi 697848504 711 GKTEEARRTFLKCSE 725
Cdd:CHL00033 127 GDSEIAEAWFDQAAE 141
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
613-771 6.77e-05

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 46.19  E-value: 6.77e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 613 WQNEEMLYRSGIKVNPaKAWG----NLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLG-LLLQENSRFSEALHYYK 687
Cdd:cd24145  128 KAVEILLKLGELWMSP-SEVGafleELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHsLVLMNNEAAELALHALR 206
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 688 LAIGSRPTLASAYLNTGiilmNQGKTEEARRTF---LKCSEIPDENLKDPHAHKSSVTScLYNLGKLFHEQGHYEDALMV 764
Cdd:cd24145  207 KPLSSTLIEASRLPQKS----RDQLLEAALKWAqkaLDVAKSIKPKDRDPECDQACALA-LYNLGVIAEMLGNLDEARKL 281

                 ....*..
gi 697848504 765 YKEAIQK 771
Cdd:cd24145  282 YKEAISL 288
TPR_12 pfam13424
Tetratricopeptide repeat;
629-690 8.32e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.99  E-value: 8.32e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  629 AKAWGNLGNVLKSQSKISEAESAYRNALY--------YRSNMADMLYNLGLLLQENSRFSEALHYYKLAI 690
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
COG3899 COG3899
Predicted ATPase [General function prediction only];
646-770 8.34e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 46.78  E-value: 8.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  646 SEAESAYRNALYYRsnMADMLYNLGLLLQENSRFSEALH------YYKLAIGSRPTLASAYLNTGIILMnqGKTEEARRT 719
Cdd:COG3899   737 PDPEEEYRLALLLE--LAEALYLAGRFEEAEALLERALAaralaaLAALRHGNPPASARAYANLGLLLL--GDYEEAYEF 812
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 697848504  720 FLKCSEIPDEnlkdpHAHKSSVTSCLYNLGKLFHEQGHYEDALMVYKEAIQ 770
Cdd:COG3899   813 GELALALAER-----LGDRRLEARALFNLGFILHWLGPLREALELLREALE 858
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
617-841 1.75e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 44.10  E-value: 1.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 617 EMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNalyyrsnmADMLYNlglllqensrfsealhyyklaigsRPTL 696
Cdd:COG4700   48 EVLPELRNSRDARRVQRAARNALDPGRELRELEKALEF--------ADTVQN------------------------RVRL 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 697 ASAYLntgiilmNQGKTEEARRTFLKCseipdenLKDPHAHKSSVtscLYNLGKLFHEQGHYEDALmVYKEAIQKMPRQF 776
Cdd:COG4700   96 ADALL-------ELGRYDEAIELYEEA-------LTGIFADDPHI---LLGLAQALFELGRYAEAL-ETLEKLIAKNPDF 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697848504 777 APQSLYNMMGEAYMRMSRLPEAERWYmESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQ 841
Cdd:COG4700  158 KSSDAHLLYARALEALGDLEAAEAEL-EALARRYSGPEARYRYAKFLARQGRTAEAKELLEEILD 221
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
888-955 2.16e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.30  E-value: 2.16e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 697848504 888 AHMLRQASLNDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKPDDVITQSNL 955
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
609-690 3.39e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 3.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 609 RNGDWQNEEMLYRSGIKVNP-----AKAWGNLGNVLKSQSKISEAESAYRNALYYRSN---MADMLYNLGLLLQENSRFS 680
Cdd:COG1729    5 KAGDYDEAIAAFKAFLKRYPnsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYD 84
                         90
                 ....*....|
gi 697848504 681 EALHYYKLAI 690
Cdd:COG1729   85 KARATLEELI 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
882-966 9.91e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.56  E-value: 9.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 882 DVVFNAAHMLRQASLNDEAEKYYEMAAGLRPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKPDDVITQSNlrkLWNI 961
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN---LGLA 81

                 ....*
gi 697848504 962 MEKQG 966
Cdd:COG4783   82 LLKAG 86
TPR_11 pfam13414
TPR repeat;
749-792 9.98e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.84  E-value: 9.98e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 697848504  749 GKLFHEQGHYEDALMVYKEAIQKMPRQfaPQSLYNmMGEAYMRM 792
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDN--PEAYYN-LGLAYYKL 41
TPR_12 pfam13424
Tetratricopeptide repeat;
886-947 1.09e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.52  E-value: 1.09e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504  886 NAAHMLRQASLNDEAEKYYEMAAGL--------RPNVSIFLMNFGAILHLNGKLKEAEENYLLALQLKPD 947
Cdd:pfam13424   8 NLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
667-722 1.67e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.70  E-value: 1.67e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 697848504  667 YNLGLLLQENSRFSEALHYYKLAIGSRPTL---ASAYLNTGIILMNQGKTEEARRTFLK 722
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESpdaAAALLLLGLAALRQGRLAEAAAAYRA 59
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
634-694 1.79e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.70  E-value: 1.79e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 697848504  634 NLGNVLKSQSKISEAESAYRNAL---YYRSNMADMLYNLGLLLQENSRFSEALHYYKLAIGSRP 694
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_1 pfam00515
Tetratricopeptide repeat;
629-656 2.04e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 2.04e-03
                          10        20
                  ....*....|....*....|....*...
gi 697848504  629 AKAWGNLGNVLKSQSKISEAESAYRNAL 656
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
750-860 2.34e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.05  E-value: 2.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 750 KLFHEQGHYEDALMVYKEAIQKMPRQfapqSLYNMMGEAymRMSRLPE----AERWymesLRSKSDHIPAHLTYGKLLAL 825
Cdd:COG3071  201 RALIALGDHDEAERLLREALKRQWDP----RLVRLYGRL--QGGDPAKqlkrAEKW----LKKHPNDPDLLLALGRLCLR 270
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 697848504 826 TGRKSEAEKYFVKAIQLDPTkGNCYMHYGQfLLEE 860
Cdd:COG3071  271 NQLWGKAREYLEAALALRPS-AEAYAELAR-LLEQ 303
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
773-856 3.21e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 40.28  E-value: 3.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 773 PRQFAPQ--SLYNMMGEAYMRMSRLPEAERWYMESLRSKSDHIPAHLTYGKLLALTGRKSEAEKYFVKAIQLDPT----- 845
Cdd:COG4785   65 RALALPDlaQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDyayay 144
                         90
                 ....*....|...
gi 697848504 846 --KGNCYMHYGQF 856
Cdd:COG4785  145 lnRGIALYYLGRY 157
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
744-773 3.22e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 3.22e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 697848504   744 CLYNLGKLFHEQGHYEDALMVYKEAIQKMP 773
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
815-845 4.90e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.58  E-value: 4.90e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 697848504  815 AHLTYGKLLALTGRKSEAEKYFVKAIQLDPT 845
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_11 pfam13414
TPR repeat;
636-676 4.92e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.53  E-value: 4.92e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 697848504  636 GNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQEN 676
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
747-859 5.90e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.48  E-value: 5.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697848504 747 NLGKLFHEQGHYEDALMVYKEAIQKmprqFAPQSLYNMMG--EAYMRMSRlPEAERWYMESLRSK------SDhipAHLT 818
Cdd:COG4700   94 RLADALLELGRYDEAIELYEEALTG----IFADDPHILLGlaQALFELGR-YAEALETLEKLIAKnpdfksSD---AHLL 165
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 697848504 819 YGKLLALTGRKSEAEKYFVKAIQLDPT-KGNCYmhYGQFLLE 859
Cdd:COG4700  166 YARALEALGDLEAAEAELEALARRYSGpEARYR--YAKFLAR 205
TPR_1 pfam00515
Tetratricopeptide repeat;
663-690 6.66e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 6.66e-03
                          10        20
                  ....*....|....*....|....*...
gi 697848504  663 ADMLYNLGLLLQENSRFSEALHYYKLAI 690
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
746-812 8.14e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.77  E-value: 8.14e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 697848504  746 YNLGKLFHEQGHYEDALMVYKEAIQKMPRQ-FAPQSLYNmMGEAYMRMSRLPEAERWYMESLRSKSDH 812
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESpDAAAALLL-LGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
629-656 8.21e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 8.21e-03
                           10        20
                   ....*....|....*....|....*...
gi 697848504   629 AKAWGNLGNVLKSQSKISEAESAYRNAL 656
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKAL 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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