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dhx9 DEAH (Asp-Glu-Ala-His) box helicase 9 [ Poecilia reticulata (guppy) ]

Gene ID: 103479954, updated on 11-Mar-2024

Summary

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Gene symbol
dhx9
Gene description
DEAH (Asp-Glu-Ala-His) box helicase 9
See related
Ensembl:ENSPREG00000019307
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See dhx9 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
29
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG17 NC_024347.1 (28712380..28727795, complement)

Linkage Group LG17 - NC_024347.1Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 2 Neighboring gene laminin, gamma 1 Neighboring gene uncharacterized LOC108167074 Neighboring gene laminin, gamma 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024347.1 Chromosome LG17 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 3'-5' DNA/RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase A
Names
DEAH-box helicase 9
DExH-box helicase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024347.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    28712380..28727795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008434672.2 → XP_008432894.1  ATP-dependent RNA helicase A isoform X1

    UniProtKB/TrEMBL
    A0A3P9Q315
    Related
    ENSPREP00000028546.1, ENSPRET00000028861.1
    Conserved Domains (6) summary
    smart00358
    Location:5 → 69
    DSRM; Double-stranded RNA binding motif
    smart00847
    Location:854 → 934
    HA2; Helicase associated domain (HA2) Add an annotation
    COG1643
    Location:392 → 1067
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd00046
    Location:422 → 562
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:650 → 783
    Helicase_C; Helicase conserved C-terminal domain
    pfam07717
    Location:974 → 1086
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

  2. XM_008434673.2 → XP_008432895.1  ATP-dependent RNA helicase A isoform X2

    Conserved Domains (5) summary
    smart00847
    Location:648 → 728
    HA2; Helicase associated domain (HA2) Add an annotation
    COG1643
    Location:186 → 861
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd00046
    Location:216 → 356
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:444 → 577
    Helicase_C; Helicase conserved C-terminal domain
    pfam07717
    Location:768 → 880
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein
Heading Accession and Version

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