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LOC103189357 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [ Callorhinchus milii (elephant shark) ]

Gene ID: 103189357, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103189357
Gene description
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
See related
Ensembl:ENSCMIG00000009661
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
ogt
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704756.1 (17772251..17800653, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890321.1 (65874..94249)

NW_024704756.1Genomic Context describing neighboring genes Neighboring gene testis expressed 11 Neighboring gene germ cell nuclear acidic peptidase Neighboring gene TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor Neighboring gene rho-related GTP-binding protein RhoG-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Names
O-GlcNAc transferase subunit p110
O-linked N-acetylglucosamine (GlcNAc) transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704756.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    17772251..17800653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007909714.2 → XP_007907905.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

    See identical proteins and their annotated locations for XP_007907905.1

    UniProtKB/TrEMBL
    A0A4W3IMF0, V9K881
    Related
    ENSCMIP00000021847.1
    Conserved Domains (5) summary
    cd05804
    Location:110 → 270
    StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
    COG0457
    Location:194 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:79 → 112
    TPR_1; Tetratricopeptide repeat
    pfam13844
    Location:546 → 1026
    Glyco_transf_41; Glycosyl transferase family 41
Nucleotide Protein
Heading Accession and Version

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