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Conserved domains on  [gi|632982017|ref|XP_007907905|]
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UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Callorhinchus milii]

Protein Classification

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase( domain architecture ID 13540367)

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, also called O-linked N-acetylglucosamine transferase (OGT), is a glycosyltransferase family 41 protein containing tetratricopeptide (TPR) repeats that catalyzes the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 466-1018 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


:

Pssm-ID: 404688  Cd Length: 543  Bit Score: 1150.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   466 VCDWTDYDERMKKLVSIVSDQLEKNRLPSVHPHHSMLYPLSHAFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKSSNGR 545
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLSGGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   546 LRVGYVSSDFGNHPTSHLMQSIPGMHNSEKFEVFCYALSADDGTNFRVKVVAEANHFVDLSQIPCNGKAADRIHQDGIHI 625
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   626 LVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAPFMDYIITDKETSPLDLAEQYSEKLAYMPNTFFIGDHANMFPHL 705
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   706 KKKAVIDFKSNG-HIYDNRIVLNGIDLKAFLDSLPDVKVVKLKCPD---GGDNSDTNSTLSMPVVPMNTaAEAIINMINQ 781
Cdd:pfam13844  241 KERAIVTDKSDGtKVRDNVAVVNATDLKPLLEKTEVKDKVKEVVVVettGNSRDSSKVEVVLPVIELPT-TEPIESMIQS 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   782 GQIQVTINGFTVSNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPPTLQMWTSILKRVPNSV 861
Cdd:pfam13844  320 GQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVPNSV 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   862 LWLLRFPAVGEPNIQQYAQSMGLPPNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPVtfpq 941
Cdd:pfam13844  400 LWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPG---- 475

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017   942 reenhncsrETLASRVAASQLTCLGCSELIAKNRQDYEDIAVMLGTDMEYLKKIRGKVWKQRVSSPLFNTKQYTMDL 1018
Cdd:pfam13844  476 ---------ETLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 180-447 2.53e-52

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 184.93  E-value: 2.53e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  180 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 259
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  260 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 339
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  340 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfA 419
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245

                         250       260
                  ....*....|....*....|....*...
gi 632982017  420 DAHSNLASIHKDSGNIPEAIASYRTALK 447
Cdd:COG2956   246 DLLLALADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
41-279 6.74e-38

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 142.45  E-value: 6.74e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   41 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 120
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  121 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 200
Cdd:COG0457    84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 632982017  201 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 279
Cdd:COG0457   164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
 
Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 466-1018 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 1150.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   466 VCDWTDYDERMKKLVSIVSDQLEKNRLPSVHPHHSMLYPLSHAFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKSSNGR 545
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLSGGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   546 LRVGYVSSDFGNHPTSHLMQSIPGMHNSEKFEVFCYALSADDGTNFRVKVVAEANHFVDLSQIPCNGKAADRIHQDGIHI 625
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   626 LVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAPFMDYIITDKETSPLDLAEQYSEKLAYMPNTFFIGDHANMFPHL 705
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   706 KKKAVIDFKSNG-HIYDNRIVLNGIDLKAFLDSLPDVKVVKLKCPD---GGDNSDTNSTLSMPVVPMNTaAEAIINMINQ 781
Cdd:pfam13844  241 KERAIVTDKSDGtKVRDNVAVVNATDLKPLLEKTEVKDKVKEVVVVettGNSRDSSKVEVVLPVIELPT-TEPIESMIQS 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   782 GQIQVTINGFTVSNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPPTLQMWTSILKRVPNSV 861
Cdd:pfam13844  320 GQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVPNSV 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   862 LWLLRFPAVGEPNIQQYAQSMGLPPNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPVtfpq 941
Cdd:pfam13844  400 LWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPG---- 475

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017   942 reenhncsrETLASRVAASQLTCLGCSELIAKNRQDYEDIAVMLGTDMEYLKKIRGKVWKQRVSSPLFNTKQYTMDL 1018
Cdd:pfam13844  476 ---------ETLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 236-1029 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 576.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  236 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPT 315
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  316 HADSLNNLanikREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 395
Cdd:COG3914    81 LELAALLL----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  396 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 475
Cdd:COG3914   157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  476 MKKLvsivsDQLEKNRLPSVHPHHSMLYPLSHAFRKAIAERHGNLCLDKinvlHKPPYEHPKDLKSSNGRLRVGYVSSDF 555
Cdd:COG3914   237 EELL-----AALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAA----AAPELPPPPNPRDPDRKLRIGYVSADF 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  556 GNHPTSHLMQSIPGMHNSEKFEVFCYALSAD-DGTNFRVKvvAEANHFVDLSQIPcNGKAADRIHQDGIHILVNMNGYTK 634
Cdd:COG3914   308 RRHAVGYLLEPLLEHHDRSRFEIYAYSTGPDdDALTQRLR--AAADHWRDIPGLS-DEEAAELIRADGIDILVDLSGHTA 384

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  635 GARNELFALRPAPIQAMWLGYPGTSGAPFMDYIITDKETSPLDLAEQYSEKLAYMPNTFFigdhanmfphlkkkavidfk 714
Cdd:COG3914   385 GNRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYL-------------------- 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  715 snghiydnrivlngidlkafldslpdvkvvklkCPDGGDNSdtnstlsmPVVPmntaaeaiinminqgqiqvtingftvs 794
Cdd:COG3914   445 ---------------------------------CYQPNDRA--------PEVA--------------------------- 456

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  795 nglattqinnkaatgeEVPrtiivtTRSQYGLPEDAIVYCNFNQLYKIDPPTLQMWTSILKRVPNSVLWLLRFP-AVGEP 873
Cdd:COG3914   457 ----------------PLP------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPEARE 514

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  874 NIQQYAQSMGLPPNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPvtfpqreenhncsRETL 953
Cdd:COG3914   515 RLRAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLA-------------GETF 581

                         730       740       750       760       770       780       790
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 632982017  954 ASRVAASQLTCLGCSELIAKNRQDYEDIAVMLGTDMEYLKKIRGKVWKQRVSSPLFNTKQYTMDLERLYLQMWEHY 1029
Cdd:COG3914   582 ASRVGASLLTALGLPELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 180-447 2.53e-52

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 184.93  E-value: 2.53e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  180 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 259
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  260 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 339
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  340 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfA 419
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245

                         250       260
                  ....*....|....*....|....*...
gi 632982017  420 DAHSNLASIHKDSGNIPEAIASYRTALK 447
Cdd:COG2956   246 DLLLALADLLERKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 23-455 2.20e-42

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 167.95  E-value: 2.20e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    23 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEHY 102
Cdd:TIGR02917  239 EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYL 318

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   103 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 182
Cdd:TIGR02917  319 NQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   183 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 262
Cdd:TIGR02917  399 ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK 478

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   263 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 342
Cdd:TIGR02917  479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   343 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 422
Cdd:TIGR02917  559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL 638

                          410       420       430
                   ....*....|....*....|....*....|...
gi 632982017   423 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 455
Cdd:TIGR02917  639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
41-279 6.74e-38

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 142.45  E-value: 6.74e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   41 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 120
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  121 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 200
Cdd:COG0457    84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 632982017  201 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 279
Cdd:COG0457   164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 14-271 1.53e-23

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 107.48  E-value: 1.53e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    14 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERG 93
Cdd:TIGR02917  638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    94 QLQEAIEHYRHALRLKPDfIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 173
Cdd:TIGR02917  718 DYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   174 IETQPNFAVAWSNLGCVFnAQGEIWLAIHHFEKAVTL---DPNFLDAYinlGNVLKEARIFDRAVAAYLRALSLSPNHAV 250
Cdd:TIGR02917  797 VKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAA 872

                          250       260
                   ....*....|....*....|.
gi 632982017   251 VHGNLACVYYEQGLIDLAIDT 271
Cdd:TIGR02917  873 IRYHLALALLATGRKAEARKE 893
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 204-502 2.07e-16

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 82.95  E-value: 2.07e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  204 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPnhavvhgnlacvyyeqglidlaidTYRRAIElqphfp 283
Cdd:NF033758   75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKP------------------------TLRQASE------ 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  284 daycNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---------- 353
Cdd:NF033758  125 ----NLAVMAQNAGDVAGAVALYQDVLKRYPDDASSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTAlkvmmrsyld 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  354 ------------------------HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 409
Cdd:NF033758  201 rkqlamaklvalravkidqndpelHHTVGLILLQEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLR 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  410 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVSDQLE 488
Cdd:NF033758  281 RILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIILHRVKDAPERAvELYKKYIAMAGGEVA 360

                         330
                  ....*....|....
gi 632982017  489 knrLPSVHPHHSML 502
Cdd:NF033758  361 ---LNAEAPVFGLL 371
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 259-475 3.64e-13

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 71.51  E-value: 3.64e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  259 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTH-ADSLNNLANIkrEQGniEEAV 337
Cdd:cd24142    10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGG--EEAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  338 RLYRKALEVfpefaaahsnLASVLQQQGKLQEALMHYKEAIRisPTFADAYSNMGntlkE--MQDV-------QGALQCY 408
Cdd:cd24142    86 QYYEKGIEI----------LEEELQALQAASAEAEEEAEELK--RKLSSALCALA----EiyMTDLcdepdaeQRCEELI 149

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 632982017  409 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYDER 475
Cdd:cd24142   150 TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 283-382 5.02e-13

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 70.27  E-value: 5.02e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  283 PDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 362
Cdd:NF033920  156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                          90       100
                  ....*....|....*....|
gi 632982017  363 QQGKLQEALMHYKEAIRISP 382
Cdd:NF033920  236 AQGCTAQARAAAECALALAP 255
TPR_12 pfam13424
Tetratricopeptide repeat;
317-380 5.87e-12

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 62.02  E-value: 5.87e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 632982017   317 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 380
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 91-452 9.65e-12

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 69.34  E-value: 9.65e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   91 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCvRSDLGNLLKAlGRleeakacY 170
Cdd:PRK11447  281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKV-NR-------Y 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  171 LKAIEtQPNFAVAWSNLGcvfnaqgeiwLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 249
Cdd:PRK11447  352 WLLIQ-QGDAALKANNLA----------QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPgNTN 420

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  250 VVHGnLACVYYEQG-------LIDL------AIDTYRRAIELqphfpDAYCNLANALKEKGNVAEAEECYNTALRLCPTH 316
Cdd:PRK11447  421 AVRG-LANLYRQQSpekalafIASLsasqrrSIDDIERSLQN-----DRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------------------EFAAAHSN--------------------- 356
Cdd:PRK11447  495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPndpeqvyayglylsgsdrdRAALAHLNtlpraqwnsniqelaqrlqsd 574

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  357 ----LASVLQQQGKLQEA--LMHYKEA-IRISPTFADAYSNMGntlkemqDVQGALQCYTRAIQINPAFADAHSNLASIH 429
Cdd:PRK11447  575 qvleTANRLRDSGKEAEAeaLLRQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARLGLIEVD 647

                         410       420
                  ....*....|....*....|...
gi 632982017  430 KDSGNIPEAiasyRTALKLKPDF 452
Cdd:PRK11447  648 IAQGDLAAA----RAQLAKLPAT 666
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 71-144 7.30e-10

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 60.64  E-value: 7.30e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 632982017   71 AIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 144
Cdd:NF033920  182 ATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 22-371 1.71e-09

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 61.86  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   22 YQAGDFEAAERHC---MQLWRQ--EPDNTGVLLL---LSSIHFQ------CRRLDRSA-------------HFSTLAikq 74
Cdd:NF040586  403 YLRGDYESARDLAeraLERWRErlGPDDRQTLRLrfhLANALRSlgryeeARELDEDTlerqrrvlglgedHPHTLM--- 479

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   75 npmlaeAYSNLGNVYKERGQLQEAIEHYRHALR-----LKPDfiDGYI-----NLAAALVAAGDmegavqaYVSALQYNP 144
Cdd:NF040586  480 ------TAGGLGADLRALGRFREALELDEETLErhrrvFGED--HPRTlraanNLAVSLRLLGD-------YREALELDR 544

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  145 DLYCVRSDLGNllkalgrleeakacylkaiETQPNFAVAWSNLGCVFNAQGEiwlaihhFEKAVTLdpnfldayinlgnv 224
Cdd:NF040586  545 EVLRRRRRVLG-------------------PDHPRTLLSANNLARDLRELGR-------YAEALDL-------------- 584

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  225 LKEARifdravaAYLRALSLSPNHAVVHG---NLA-----CVYYEQGLiDLAIDTYRRAIELQ-PHFPD---AYCNLANA 292
Cdd:NF040586  585 LEEAL-------ERYREVLGGPDHPDTLRaakSLAvalrrAGRLEEAL-ELAEDTYERYRRRFgPDHPDtlaAALSLAND 656

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  293 LKEKGN----VAEAEECYNT-ALRLCPTHADSL---NNLANIKREQGNIEEAVRLYRKALEVFPE----------FAAAh 354
Cdd:NF040586  657 LRALGDadeaRELAREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAEAALEGLRErlgpdhpytlAAAV- 735

                         410
                  ....*....|....*..
gi 632982017  355 sNLASVLQQQGKLQEAL 371
Cdd:NF040586  736 -NLANDLAALGDLDAAL 751
TPR_1 pfam00515
Tetratricopeptide repeat;
79-112 1.45e-08

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 51.27  E-value: 1.45e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017    79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 112
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 79-112 5.76e-08

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 49.37  E-value: 5.76e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 632982017     79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 112
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 256-348 8.45e-08

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 54.48  E-value: 8.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  256 ACVYYEQ-GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 334
Cdd:NF033920  162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241

                          90
                  ....*....|....
gi 632982017  335 EAVRLYRKALEVFP 348
Cdd:NF033920  242 QARAAAECALALAP 255
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 283-316 2.93e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 44.74  E-value: 2.93e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 632982017    283 PDAYCNLANALKEKGNVAEAEECYNTALRLCPTH 316
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 24-318 3.56e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.07  E-value: 3.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   24 AGDFEAAERHCMQLWRQEpdntgvllllssihfqcRRLDRSAHFSTLAikqnpmlaeAYSNLGNVYKERGQLQEAIEHYR 103
Cdd:NF040586  533 LGDYREALELDREVLRRR-----------------RRVLGPDHPRTLL---------SANNLARDLRELGRYAEALDLLE 586

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  104 HALR------LKPDFIDGYI---NLAAALVAAGDMEGA-------VQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEA 166
Cdd:NF040586  587 EALEryrevlGGPDHPDTLRaakSLAVALRRAGRLEEAlelaedtYERYRRRFGpDHPDTLAAALSLANDLRALGDADEA 666

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  167 kacyLKAIETqpnfavawsnlgcvfnaqgeiwlAIHHFEKAVTLD-PNFLDAYINLGNVLK------EARIFDRAVAAYL 239
Cdd:NF040586  667 ----RELARE-----------------------VLDRYRRVLGEDhPFTLACRNNLAVLLRalgdpeEARELAEAALEGL 719

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  240 RAlSLSPNH------AVvhgNLACVYYEQGLIDLAID--TYRRAIELQ-------PHFPD---AYCNLANALKEKGNVAE 301
Cdd:NF040586  720 RE-RLGPDHpytlaaAV---NLANDLAALGDLDAALGeeALERLRRLLgedlragPDHPDtlaCAANLALDLRATGRTEE 795

                         330       340
                  ....*....|....*....|..
gi 632982017  302 AEECYNTAL-----RLCPTHAD 318
Cdd:NF040586  796 AEELRADTLarlrrVLGPDHPD 817
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 227-498 3.72e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.07  E-value: 3.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  227 EARIFDRAVAAYLRALsLSPNHA---VVHGNLACVY-----YEQGLiDLAIDTYRRAIELQPhfPD------AYCNLANA 292
Cdd:NF040586  496 EALELDEETLERHRRV-FGEDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLG--PDhprtllSANNLARD 571

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  293 LKEKGNVAEA----EECYNTALRLC--PTHADSLN---NLANIKREQGNIEEAVRL----YRKALEVF----PEFAAAHS 355
Cdd:NF040586  572 LRELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEALELaedtYERYRRRFgpdhPDTLAAAL 651

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  356 NLASVLQQQGKLQEALMHYKEAIRISP---------TFAdAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAH--- 422
Cdd:NF040586  652 SLANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpyt 730

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  423 ----SNLASIHKDSGNIPEAIAS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYDERMKKLVSIVSDQ 486
Cdd:NF040586  731 laaaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLAR 806

                         330
                  ....*....|..
gi 632982017  487 LEKnRLPSVHPH 498
Cdd:NF040586  807 LRR-VLGPDHPD 817
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 93-226 2.72e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.82  E-value: 2.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   93 GQLQEAIEHYRHALRLKPDFID-GYI--NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAc 169
Cdd:PRK02603   49 GEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG- 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017  170 ylkaietQPNFAVAWsnlgcvFNAQGEIWlaihhfEKAVTLDPNfldAYINLGNVLK 226
Cdd:PRK02603  128 -------DQDEAEAL------FDKAAEYW------KQAIRLAPN---NYIEAQNWLK 162
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 200-280 3.34e-04

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 43.69  E-value: 3.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  200 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 279
Cdd:NF033920  175 ALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALA 254


                  .
gi 632982017  280 P 280
Cdd:NF033920  255 P 255
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 23-175 9.57e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 9.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   23 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS-AHFSTlAIKQNPML-AEAYSNLgnvykerGQL---QE 97
Cdd:cd24142    12 DQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEArEVLLR-AIELDPDGgYEKYLYL-------GQLsggEE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   98 AIEHYR----------HALRLKPDFIDGYIN-----LAAALVAAG-----------DMEGAVQAYV-SALQYNPDLYCVR 150
Cdd:cd24142    84 ALQYYEkgieileeelQALQAASAEAEEEAEelkrkLSSALCALAeiymtdlcdepDAEQRCEELItKALELDPTNPEAL 163

                         170       180
                  ....*....|....*....|....*
gi 632982017  151 SDLGNLLKALGRLEEAKACYLKAIE 175
Cdd:cd24142   164 QTLASLRISQQRPDEAKEALRRSLE 188
 
Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 466-1018 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 1150.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   466 VCDWTDYDERMKKLVSIVSDQLEKNRLPSVHPHHSMLYPLSHAFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKSSNGR 545
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLSGGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   546 LRVGYVSSDFGNHPTSHLMQSIPGMHNSEKFEVFCYALSADDGTNFRVKVVAEANHFVDLSQIPCNGKAADRIHQDGIHI 625
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   626 LVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGAPFMDYIITDKETSPLDLAEQYSEKLAYMPNTFFIGDHANMFPHL 705
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   706 KKKAVIDFKSNG-HIYDNRIVLNGIDLKAFLDSLPDVKVVKLKCPD---GGDNSDTNSTLSMPVVPMNTaAEAIINMINQ 781
Cdd:pfam13844  241 KERAIVTDKSDGtKVRDNVAVVNATDLKPLLEKTEVKDKVKEVVVVettGNSRDSSKVEVVLPVIELPT-TEPIESMIQS 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   782 GQIQVTINGFTVSNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPPTLQMWTSILKRVPNSV 861
Cdd:pfam13844  320 GQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVPNSV 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   862 LWLLRFPAVGEPNIQQYAQSMGLPPNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPVtfpq 941
Cdd:pfam13844  400 LWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPG---- 475

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017   942 reenhncsrETLASRVAASQLTCLGCSELIAKNRQDYEDIAVMLGTDMEYLKKIRGKVWKQRVSSPLFNTKQYTMDL 1018
Cdd:pfam13844  476 ---------ETLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 236-1029 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 576.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  236 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPT 315
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  316 HADSLNNLanikREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 395
Cdd:COG3914    81 LELAALLL----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  396 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 475
Cdd:COG3914   157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  476 MKKLvsivsDQLEKNRLPSVHPHHSMLYPLSHAFRKAIAERHGNLCLDKinvlHKPPYEHPKDLKSSNGRLRVGYVSSDF 555
Cdd:COG3914   237 EELL-----AALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAA----AAPELPPPPNPRDPDRKLRIGYVSADF 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  556 GNHPTSHLMQSIPGMHNSEKFEVFCYALSAD-DGTNFRVKvvAEANHFVDLSQIPcNGKAADRIHQDGIHILVNMNGYTK 634
Cdd:COG3914   308 RRHAVGYLLEPLLEHHDRSRFEIYAYSTGPDdDALTQRLR--AAADHWRDIPGLS-DEEAAELIRADGIDILVDLSGHTA 384

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  635 GARNELFALRPAPIQAMWLGYPGTSGAPFMDYIITDKETSPLDLAEQYSEKLAYMPNTFFigdhanmfphlkkkavidfk 714
Cdd:COG3914   385 GNRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYL-------------------- 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  715 snghiydnrivlngidlkafldslpdvkvvklkCPDGGDNSdtnstlsmPVVPmntaaeaiinminqgqiqvtingftvs 794
Cdd:COG3914   445 ---------------------------------CYQPNDRA--------PEVA--------------------------- 456

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  795 nglattqinnkaatgeEVPrtiivtTRSQYGLPEDAIVYCNFNQLYKIDPPTLQMWTSILKRVPNSVLWLLRFP-AVGEP 873
Cdd:COG3914   457 ----------------PLP------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPEARE 514

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  874 NIQQYAQSMGLPPNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPvtfpqreenhncsRETL 953
Cdd:COG3914   515 RLRAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLA-------------GETF 581

                         730       740       750       760       770       780       790
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 632982017  954 ASRVAASQLTCLGCSELIAKNRQDYEDIAVMLGTDMEYLKKIRGKVWKQRVSSPLFNTKQYTMDLERLYLQMWEHY 1029
Cdd:COG3914   582 ASRVGASLLTALGLPELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 180-447 2.53e-52

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 184.93  E-value: 2.53e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  180 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 259
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  260 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 339
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  340 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfA 419
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245

                         250       260
                  ....*....|....*....|....*...
gi 632982017  420 DAHSNLASIHKDSGNIPEAIASYRTALK 447
Cdd:COG2956   246 DLLLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 153-415 2.14e-49

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 176.46  E-value: 2.14e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  153 LGNLLKAL-----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 227
Cdd:COG2956     9 LGWYFKGLnyllnGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  228 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYN 307
Cdd:COG2956    89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  308 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTfADA 387
Cdd:COG2956   169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDL 247

                         250       260
                  ....*....|....*....|....*...
gi 632982017  388 YSNMGNTLKEMQDVQGALQCYTRAIQIN 415
Cdd:COG2956   248 LLALADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 231-490 6.54e-49

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 174.92  E-value: 6.54e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  231 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTAL 310
Cdd:COG2956    24 PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  311 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 390
Cdd:COG2956   104 ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLL 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  391 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDfPDAYCNLAHCLQivcdwt 470
Cdd:COG2956   184 LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLE------ 256

                         250       260
                  ....*....|....*....|
gi 632982017  471 dYDERMKKLVSIVSDQLEKN 490
Cdd:COG2956   257 -RKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
276-456 1.04e-47

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 170.57  E-value: 1.04e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  276 IELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 355
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  356 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 435
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180
                  ....*....|....*....|.
gi 632982017  436 PEAIASYRTALKLKPDFPDAY 456
Cdd:COG0457   161 EEALELLEKLEAAALAALLAA 181
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
242-448 4.66e-47

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 168.65  E-value: 4.66e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  242 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLN 321
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  322 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV 401
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 632982017  402 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 448
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
208-379 4.89e-47

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 168.65  E-value: 4.89e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  208 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 287
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  288 NLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 367
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170
                  ....*....|..
gi 632982017  368 QEALMHYKEAIR 379
Cdd:COG0457   161 EEALELLEKLEA 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
174-379 1.12e-46

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 167.49  E-value: 1.12e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  174 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 253
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  254 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNI 333
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 632982017  334 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 379
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 49-311 5.62e-46

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 166.83  E-value: 5.62e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   49 LLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 128
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  129 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 208
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  209 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHfPDAYCN 288
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLA 250

                         250       260
                  ....*....|....*....|...
gi 632982017  289 LANALKEKGNVAEAEECYNTALR 311
Cdd:COG2956   251 LADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 85-345 6.49e-46

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 166.44  E-value: 6.49e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   85 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 164
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  165 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 244
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  245 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPThADSLNNLA 324
Cdd:COG2956   174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALA 252

                         250       260
                  ....*....|....*....|.
gi 632982017  325 NIKREQGNIEEAVRLYRKALE 345
Cdd:COG2956   253 DLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
140-380 4.74e-45

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 162.87  E-value: 4.74e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  140 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 219
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  220 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNV 299
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  300 AEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 379
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                  .
gi 632982017  380 I 380
Cdd:COG0457   241 Y 241
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
310-464 1.16e-43

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 159.02  E-value: 1.16e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  310 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 389
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017  390 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 464
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 23-455 2.20e-42

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 167.95  E-value: 2.20e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    23 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEHY 102
Cdd:TIGR02917  239 EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYL 318

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   103 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 182
Cdd:TIGR02917  319 NQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   183 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 262
Cdd:TIGR02917  399 ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK 478

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   263 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 342
Cdd:TIGR02917  479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   343 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 422
Cdd:TIGR02917  559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL 638

                          410       420       430
                   ....*....|....*....|....*....|...
gi 632982017   423 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 455
Cdd:TIGR02917  639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 259-492 2.32e-42

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 156.43  E-value: 2.32e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  259 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 338
Cdd:COG2956    18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  339 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 418
Cdd:COG2956    98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 632982017  419 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVSDQLEKNRL 492
Cdd:COG2956   178 ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-304 2.39e-42

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 155.16  E-value: 2.39e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   72 IKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS 151
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  152 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 231
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 632982017  232 DRAVAAYLRALSLSPNHAVVHG---NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEE 304
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAAlgeAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLA 236
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 21-450 2.95e-41

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 164.49  E-value: 2.95e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    21 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIE 100
Cdd:TIGR02917  305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAE 384

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   101 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLycVRSDLGNLLKALGRLEEAKAcyLKAIET---- 176
Cdd:TIGR02917  385 YLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL--GRADLLLILSYLRSGQFDKA--LAAAKKlekk 460

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   177 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV-LKEARIfDRAVAAYLRALSLSPNHAVVHGNL 255
Cdd:TIGR02917  461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIdIQEGNP-DDAIQRFEKVLTIDPKNLRAILAL 539

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   256 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEE 335
Cdd:TIGR02917  540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   336 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 415
Cdd:TIGR02917  620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699

                          410       420       430
                   ....*....|....*....|....*....|....*
gi 632982017   416 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 450
Cdd:TIGR02917  700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
41-279 6.74e-38

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 142.45  E-value: 6.74e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   41 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 120
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  121 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 200
Cdd:COG0457    84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 632982017  201 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 279
Cdd:COG0457   164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 41-440 6.09e-35

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 144.46  E-value: 6.09e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    41 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 120
Cdd:TIGR02917  495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA 574

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   121 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 200
Cdd:TIGR02917  575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKA 654

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   201 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 280
Cdd:TIGR02917  655 ITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   281 HfPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 360
Cdd:TIGR02917  735 S-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWL 813

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   361 LQQQgKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 440
Cdd:TIGR02917  814 YLEL-KDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 17-461 1.67e-34

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 142.92  E-value: 1.67e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    17 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQ 96
Cdd:TIGR02917  199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    97 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 176
Cdd:TIGR02917  279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL 358

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   177 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGnVLK----EARifdRAVAAYLRALSLSPNHAVVH 252
Cdd:TIGR02917  359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG-ISKlsqgDPS---EAIADLETAAQLDPELGRAD 434

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   253 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGN 332
Cdd:TIGR02917  435 LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   333 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI 412
Cdd:TIGR02917  515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*....
gi 632982017   413 QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 461
Cdd:TIGR02917  595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 13-486 1.36e-32

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 136.75  E-value: 1.36e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    13 GLAELAhreyqAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKER 92
Cdd:TIGR02917  132 GLAYLG-----LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSL 206

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    93 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDlycvrSDLGNLLKAL-----GRLEEAK 167
Cdd:TIGR02917  207 GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN-----SPLAHYLKALvdfqkKNYEDAR 281

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   168 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 247
Cdd:TIGR02917  282 ETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD 361

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   248 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCP--THADSLNNLAN 325
Cdd:TIGR02917  362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPelGRADLLLILSY 441

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   326 IKREQ--------------------------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 373
Cdd:TIGR02917  442 LRSGQfdkalaaakklekkqpdnaslhnllgaiylgkGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   374 YKEAIRISPTFADAYsnmgNTLKEMQDVQG----ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 449
Cdd:TIGR02917  522 FEKVLTIDPKNLRAI----LALAGLYLRTGneeeAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597

                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 632982017   450 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVSDQ 486
Cdd:TIGR02917  598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 289-460 3.58e-32

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 126.77  E-value: 3.58e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  289 LANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 368
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  369 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 448
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                         170
                  ....*....|..
gi 632982017  449 KPDFPDAYCNLA 460
Cdd:COG2956   174 DPDCARALLLLA 185
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 71-460 3.25e-29

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 125.97  E-value: 3.25e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    71 AIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYI---------------------NLAAA 122
Cdd:TIGR02917   48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGypknqvlPLLARAYLlqgkfqqvldelpgktllddeGAAEL 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   123 LVAAGD-------MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 195
Cdd:TIGR02917  128 LALRGLaylglgqLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   196 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAvAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR 274
Cdd:TIGR02917  208 NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA-EKHADALLKKaPNSPLAHYLKALVDFQKKNYEDARETLQD 286

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   275 AIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 354
Cdd:TIGR02917  287 ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAAL 366

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   355 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA------------- 421
Cdd:TIGR02917  367 SLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAdlllilsylrsgq 446

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   422 ---------------------HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 460
Cdd:TIGR02917  447 fdkalaaakklekkqpdnaslHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLA 506
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 317-452 4.56e-29

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 113.36  E-value: 4.56e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 396
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 632982017  397 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 452
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
22-183 3.58e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 114.33  E-value: 3.58e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   22 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEH 101
Cdd:COG0457    19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALED 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  102 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 181
Cdd:COG0457    99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAAL 178


                  ..
gi 632982017  182 VA 183
Cdd:COG0457   179 LA 180
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 79-460 5.35e-28

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 122.11  E-value: 5.35e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 158
Cdd:TIGR02917   22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   159 ALGRLEEAKAcYLKAIETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 236
Cdd:TIGR02917  102 LQGKFQQVLD-ELPGKTLLDDegAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   237 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTH 316
Cdd:TIGR02917  181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 396
Cdd:TIGR02917  261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQL 340

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 632982017   397 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 460
Cdd:TIGR02917  341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 255-382 6.68e-28

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 109.90  E-value: 6.68e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  255 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 334
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 632982017  335 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 382
Cdd:COG4783    90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 215-350 3.15e-27

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 107.97  E-value: 3.15e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  215 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 294
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 632982017  295 EKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 350
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 284-418 8.71e-27

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 106.81  E-value: 8.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  284 DAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 363
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 632982017  364 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 418
Cdd:COG4783    85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 152-282 1.10e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 106.43  E-value: 1.10e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  152 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 231
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 632982017  232 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 282
Cdd:COG4783    89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
203-379 4.77e-25

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 104.61  E-value: 4.77e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  203 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLsPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 282
Cdd:COG4785    28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  283 PDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL----- 357
Cdd:COG4785   107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLylaer 186

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 632982017  358 ---------------ASVLQQQGKLQEALMHYKEAIR 379
Cdd:COG4785   187 kldpekalallledwATAYLLQGDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 79-214 1.73e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 100.27  E-value: 1.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 158
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 632982017  159 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 214
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 268-388 2.58e-24

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 99.31  E-value: 2.58e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  268 AIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 347
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 632982017  348 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 388
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 233-353 3.73e-24

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 98.92  E-value: 3.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  233 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRL 312
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 632982017  313 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 353
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
116-345 7.17e-24

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 101.15  E-value: 7.17e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  116 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE------TQPNFAVAWSNLGC 189
Cdd:COG4785     2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  190 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 269
Cdd:COG4785    82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 632982017  270 DTYRRAIELQPHFPDAYCNLanalkekgNVAEAEECYNTALRLCPTHADSLNNLanikreQGNIEEAVRLYRKALE 345
Cdd:COG4785   162 ADLEKALELDPNDPERALWL--------YLAERKLDPEKALALLLEDWATAYLL------QGDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 181-316 1.04e-23

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 97.96  E-value: 1.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  181 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 260
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 632982017  261 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTH 316
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 14-271 1.53e-23

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 107.48  E-value: 1.53e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    14 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERG 93
Cdd:TIGR02917  638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    94 QLQEAIEHYRHALRLKPDfIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 173
Cdd:TIGR02917  718 DYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   174 IETQPNFAVAWSNLGCVFnAQGEIWLAIHHFEKAVTL---DPNFLDAYinlGNVLKEARIFDRAVAAYLRALSLSPNHAV 250
Cdd:TIGR02917  797 VKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAA 872

                          250       260
                   ....*....|....*....|.
gi 632982017   251 VHGNLACVYYEQGLIDLAIDT 271
Cdd:TIGR02917  873 IRYHLALALLATGRKAEARKE 893
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 200-318 2.04e-23

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 96.61  E-value: 2.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  200 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 279
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 632982017  280 PHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHAD 318
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
285-459 3.80e-23

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 99.22  E-value: 3.80e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  285 AYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLA 358
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdralalPDLAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  359 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 438
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                         170       180
                  ....*....|....*....|.
gi 632982017  439 IASYRTALKLKPDFPDAYCNL 459
Cdd:COG4785   161 IADLEKALELDPNDPERALWL 181
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 301-428 2.13e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 93.92  E-value: 2.13e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  301 EAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 380
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 632982017  381 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 428
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 335-456 2.87e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 93.53  E-value: 2.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  335 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 414
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 632982017  415 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 456
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 14-145 2.91e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 93.72  E-value: 2.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   14 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERG 93
Cdd:COG4783     7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 632982017   94 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 145
Cdd:COG4783    87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 47-180 1.55e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 91.79  E-value: 1.55e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   47 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 126
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 632982017  127 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 180
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
74-236 2.41e-21

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 93.83  E-value: 2.41e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   74 QNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 153
Cdd:COG4785    68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  154 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLgcvFNAQGEIwlaihHFEKAV-TLDPNFLDAYINLGNVLKEARIFD 232
Cdd:COG4785   148 GIALYYLGRYELAIADLEKALELDPNDPERALWL---YLAERKL-----DPEKALaLLLEDWATAYLLQGDTEEARELFK 219


                  ....
gi 632982017  233 RAVA 236
Cdd:COG4785   220 LALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 351-486 2.65e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 91.02  E-value: 2.65e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  351 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 430
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 632982017  431 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVSDQ 486
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 79-477 3.07e-21

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 99.29  E-value: 3.07e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIdGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 158
Cdd:TIGR00990  127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   159 ALGRLEEA---------------------------KACYLKAIE----TQPNFAVAWS--NLGCVFNAQgeiwLAIHHFE 205
Cdd:TIGR00990  206 GLGKYADAlldltasciidgfrneqsaqaverllkKFAESKAKEiletKPENLPSVTFvgNYLQSFRPK----PRPAGLE 281

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   206 KAVTLDPNFLDAYINLGNVLKEARI---FDRAVAAYLRALS---LSPNHAVVH---GNLACVY--YEQGLIDLaidtyRR 274
Cdd:TIGR00990  282 DSNELDEETGNGQLQLGLKSPESKAdesYEEAARAFEKALDlgkLGEKEAIALnlrGTFKCLKgkHLEALADL-----SK 356

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   275 AIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 354
Cdd:TIGR00990  357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   355 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS-- 432
Cdd:TIGR00990  437 IQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAla 516

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 632982017   433 -----GNIPEAIASYRTALKLKPDFPDAYCNLAhclQIVCDWTDYDERMK 477
Cdd:TIGR00990  517 lfqwkQDFIEAENLCEKALIIDPECDIAVATMA---QLLLQQGDVDEALK 563
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 210-348 3.12e-21

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 91.56  E-value: 3.12e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  210 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 289
Cdd:COG5010    15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 632982017  290 ANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 348
Cdd:COG5010    95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
258-349 4.31e-21

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 88.69  E-value: 4.31e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  258 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEEcYNTALRLCPTHADSLNNLANIKREQGNIEEAV 337
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 632982017  338 RLYRKALEVFPE 349
Cdd:COG3063    80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 231-382 5.16e-21

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 90.79  E-value: 5.16e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  231 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTAL 310
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 632982017  311 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 382
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 71-181 5.97e-21

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 89.68  E-value: 5.97e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   71 AIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 150
Cdd:COG4235     9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88

                          90       100       110
                  ....*....|....*....|....*....|.
gi 632982017  151 SDLGNLLKALGRLEEAKACYLKAIETQPNFA 181
Cdd:COG4235    89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 165-286 3.01e-20

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 87.75  E-value: 3.01e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  165 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 244
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 632982017  245 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 286
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-370 3.43e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 96.69  E-value: 3.43e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017     1 MAASVGNVSDSTGLAELAHREyqaGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAE 80
Cdd:TIGR02917  526 LTIDPKNLRAILALAGLYLRT---GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    81 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL 160
Cdd:TIGR02917  603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   161 GRLEEAKACYlKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN----------------------FLDA 217
Cdd:TIGR02917  683 KRTESAKKIA-KSLQKQhPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSsqnaiklhrallasgntaeavkTLEA 761

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   218 YIN-----------LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDlAIDTYRRAIELQPHFPday 286
Cdd:TIGR02917  762 WLKthpndavlrtaLAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIP--- 837

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   287 cnlanalkekgnvaeaeecyntalrlcpthaDSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 366
Cdd:TIGR02917  838 -------------------------------AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886


                   ....
gi 632982017   367 LQEA 370
Cdd:TIGR02917  887 KAEA 890
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
326-417 2.56e-19

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 83.68  E-value: 2.56e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  326 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMhYKEAIRISPTFADAYSNMGNTLKEMQDVQGAL 405
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 632982017  406 QCYTRAIQINPA 417
Cdd:COG3063    80 AYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
210-447 2.62e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 88.05  E-value: 2.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  210 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELqPHFPDAYCNL 289
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYER 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  290 ANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 369
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 632982017  370 ALMHYKEAIRISPTFADAYSNMGNTLKEmQDVQGALQCYTRAIQINpafadahsnlasiHKDSGNIPEAIASYRTALK 447
Cdd:COG4785   160 AIADLEKALELDPNDPERALWLYLAERK-LDPEKALALLLEDWATA-------------YLLQGDTEEARELFKLALA 223
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 14-159 3.57e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 93.13  E-value: 3.57e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   14 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERG 93
Cdd:COG3914   115 LFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG 194

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017   94 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA--VQAYVSALQYNPD-------LYCVRSDLGNLLKA 159
Cdd:COG3914   195 RLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYdrFEELLAALARGPSelspfalLYLPDDDPAELLAL 269
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 94-246 3.95e-19

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 85.40  E-value: 3.95e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   94 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 173
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 632982017  174 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 246
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 267-416 6.17e-19

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 85.01  E-value: 6.17e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  267 LAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 346
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  347 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 416
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 97-213 1.44e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 82.75  E-value: 1.44e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   97 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 176
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 632982017  177 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 213
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
360-451 1.61e-18

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 81.37  E-value: 1.61e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  360 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQcYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 439
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 632982017  440 ASYRTALKLKPD 451
Cdd:COG3063    80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 334-450 2.45e-18

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 83.09  E-value: 2.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  334 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 413
Cdd:COG5010    37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 632982017  414 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 450
Cdd:COG5010   117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 156-280 2.76e-18

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 83.09  E-value: 2.76e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  156 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 235
Cdd:COG5010    29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 632982017  236 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 280
Cdd:COG5010   109 EYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
190-280 9.29e-18

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 79.44  E-value: 9.29e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  190 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVaAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 269
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|.
gi 632982017  270 DTYRRAIELQP 280
Cdd:COG3063    80 AYLERALELDP 90
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 78-178 1.51e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 80.77  E-value: 1.51e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   78 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 157
Cdd:COG5010    53 AFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132

                          90       100
                  ....*....|....*....|.
gi 632982017  158 KALGRLEEAKACYLKAIETQP 178
Cdd:COG5010   133 LSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 132-249 3.30e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 78.89  E-value: 3.30e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  132 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 211
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 632982017  212 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 249
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
88-179 8.71e-17

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 76.36  E-value: 8.71e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   88 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQaYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 167
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 632982017  168 ACYLKAIETQPN 179
Cdd:COG3063    80 AYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
8-208 1.52e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.96  E-value: 1.52e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    8 VSDSTGLAELAHREYQAGDFEAAERHcmQLWRQEPDNTGVLLLLSSIHFQCRRLDRS-AHFSTlAIKQNPMLAEAYSNLG 86
Cdd:COG4785    38 AIALADLALALAAAALAAAALAAERI--DRALALPDLAQLYYERGVAYDSLGDYDLAiADFDQ-ALELDPDLAEAYNNRG 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   87 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLyCVRSDLGNLLKALGRLEEA 166
Cdd:COG4785   115 LAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND-PERALWLYLAERKLDPEKA 193

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 632982017  167 KACYLKAIETQpnfavawsnlgcvFNAQGEIWLAIHHFEKAV 208
Cdd:COG4785   194 LALLLEDWATA-------------YLLQGDTEEARELFKLAL 222
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
156-247 1.79e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 75.59  E-value: 1.79e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  156 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIhHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 235
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 632982017  236 AAYLRALSLSPN 247
Cdd:COG3063    80 AYLERALELDPS 91
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 204-502 2.07e-16

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 82.95  E-value: 2.07e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  204 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPnhavvhgnlacvyyeqglidlaidTYRRAIElqphfp 283
Cdd:NF033758   75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKP------------------------TLRQASE------ 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  284 daycNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---------- 353
Cdd:NF033758  125 ----NLAVMAQNAGDVAGAVALYQDVLKRYPDDASSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTAlkvmmrsyld 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  354 ------------------------HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 409
Cdd:NF033758  201 rkqlamaklvalravkidqndpelHHTVGLILLQEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLR 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  410 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVSDQLE 488
Cdd:NF033758  281 RILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIILHRVKDAPERAvELYKKYIAMAGGEVA 360

                         330
                  ....*....|....
gi 632982017  489 knrLPSVHPHHSML 502
Cdd:NF033758  361 ---LNAEAPVFGLL 371
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 60-212 2.48e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 77.31  E-value: 2.48e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   60 RLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 139
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 632982017  140 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 212
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 369-460 2.84e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 76.20  E-value: 2.84e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  369 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 448
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90
                  ....*....|..
gi 632982017  449 KPDFPDAYCNLA 460
Cdd:COG4235    81 DPDNPEALYLLG 92
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 284-455 3.98e-16

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 78.92  E-value: 3.98e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   284 DAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 363
Cdd:TIGR02521   32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   364 QGKLQEALMHYKEAIRiSPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 440
Cdd:TIGR02521  112 QGKYEQAMQQFEQAIE-DPLYpqpARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190

                          170
                   ....*....|....*
gi 632982017   441 SYRTALKLKPDFPDA 455
Cdd:TIGR02521  191 YLERYQQTYNQTAES 205
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 256-479 4.14e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 83.59  E-value: 4.14e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   256 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEE 335
Cdd:TIGR02917   29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQ 108

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   336 AVRLYRKA-LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 414
Cdd:TIGR02917  109 VLDELPGKtLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017   415 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAhclQIVCDWTDYDERMKKL 479
Cdd:TIGR02917  189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA---TILIEAGEFEEAEKHA 250
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 39-145 1.93e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 73.89  E-value: 1.93e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   39 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 118
Cdd:COG4235    11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90

                          90       100
                  ....*....|....*....|....*..
gi 632982017  119 LAAALVAAGDMEGAVQAYVSALQYNPD 145
Cdd:COG4235    91 LGLAAFQQGDYAEAIAAWQKLLALLPA 117
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 329-461 3.32e-15

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 76.22  E-value: 3.32e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   329 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 408
Cdd:TIGR02521   43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 632982017   409 TRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 461
Cdd:TIGR02521  123 EQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 116-280 3.58e-15

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 76.22  E-value: 3.58e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   116 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 195
Cdd:TIGR02521   34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   196 EIWLAIHHFEKAVtLDPNF---LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI---DLAI 269
Cdd:TIGR02521  114 KYEQAMQQFEQAI-EDPLYpqpARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYkdaRAYL 192

                          170
                   ....*....|.
gi 632982017   270 DTYRRAIELQP 280
Cdd:TIGR02521  193 ERYQQTYNQTA 203
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 14-144 4.19e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 73.84  E-value: 4.19e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   14 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERG 93
Cdd:COG5010    23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 632982017   94 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 144
Cdd:COG5010   103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 73-383 8.33e-15

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 78.87  E-value: 8.33e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    73 KQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDLYCV 149
Cdd:TIGR00990  325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNsedPDIYYH 404

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   150 RSDLgNLLKAlgrleeakacylkaietqpNFAVAWSNlgcvfnaqgeiwlaihhFEKAVTLDPNFLDAYINLGnvlkear 229
Cdd:TIGR00990  405 RAQL-HFIKG-------------------EFAQAGKD-----------------YQKSIDLDPDFIFSHIQLG------- 440

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   230 ifdravaaylralslspnhavvhgnlaCVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTA 309
Cdd:TIGR00990  441 ---------------------------VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   310 LRL-------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 382
Cdd:TIGR00990  494 IELeketkpmYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573


                   .
gi 632982017   383 T 383
Cdd:TIGR00990  574 T 574
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 79-250 1.65e-14

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 74.30  E-value: 1.65e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 158
Cdd:TIGR02521   31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   159 ALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 236
Cdd:TIGR02521  111 QQGKYEQAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190

                          170
                   ....*....|....
gi 632982017   237 AYLRALSLSPNHAV 250
Cdd:TIGR02521  191 YLERYQQTYNQTAE 204
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
54-147 1.76e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 69.81  E-value: 1.76e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   54 IHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERGQLQEAIEhYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 133
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....
gi 632982017  134 QAYVSALQYNPDLY 147
Cdd:COG3063    80 AYLERALELDPSAL 93
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
122-216 5.59e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 68.66  E-value: 5.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  122 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAcYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 201
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....*
gi 632982017  202 HHFEKAVTLDPNFLD 216
Cdd:COG3063    80 AYLERALELDPSALR 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 338-463 9.79e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.99  E-value: 9.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  338 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 417
Cdd:COG5010     7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 632982017  418 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 463
Cdd:COG5010    87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 259-475 3.64e-13

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 71.51  E-value: 3.64e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  259 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTH-ADSLNNLANIkrEQGniEEAV 337
Cdd:cd24142    10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGG--EEAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  338 RLYRKALEVfpefaaahsnLASVLQQQGKLQEALMHYKEAIRisPTFADAYSNMGntlkE--MQDV-------QGALQCY 408
Cdd:cd24142    86 QYYEKGIEI----------LEEELQALQAASAEAEEEAEELK--RKLSSALCALA----EiyMTDLcdepdaeQRCEELI 149

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 632982017  409 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYDER 475
Cdd:cd24142   150 TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 283-382 5.02e-13

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 70.27  E-value: 5.02e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  283 PDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 362
Cdd:NF033920  156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                          90       100
                  ....*....|....*....|
gi 632982017  363 QQGKLQEALMHYKEAIRISP 382
Cdd:NF033920  236 AQGCTAQARAAAECALALAP 255
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
22-111 5.74e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.58  E-value: 5.74e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   22 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTlAIKQNPMLAEAYSNLGNVYKERGQLQEAIEH 101
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                          90
                  ....*....|
gi 632982017  102 YRHALRLKPD 111
Cdd:COG3063    82 LERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 7-126 9.81e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.18  E-value: 9.81e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    7 NVSDSTGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLG 86
Cdd:COG4235    13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLG 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 632982017   87 NVYKERGQLQEAIEHYRHALRLKPDFIDGYInLAAALVAA 126
Cdd:COG4235    93 LAAFQQGDYAEAIAAWQKLLALLPADAPARL-LEASIAEA 131
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
397-463 1.71e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.42  E-value: 1.71e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017  397 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAsYRTALKLKPDFPDAYCNLAHCL 463
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELL 69
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 157-347 2.47e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 69.19  E-value: 2.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  157 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVL--KEA-RIFD 232
Cdd:cd24142    10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSggEEAlQYYE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  233 RAVAAYLRALslspnhavvhgnlacvyyeQGLIDLAIDTYRRAIELQPHFPDAYCNLA-----------NAlkEkgnvAE 301
Cdd:cd24142    90 KGIEILEEEL-------------------QALQAASAEAEEEAEELKRKLSSALCALAeiymtdlcdepDA--E----QR 144

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 632982017  302 AEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 347
Cdd:cd24142   145 CEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELW 190
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 14-112 4.45e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.44  E-value: 4.45e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   14 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKERG 93
Cdd:COG4783    41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120

                          90
                  ....*....|....*....
gi 632982017   94 QLQEAIEHYRHALRLKPDF 112
Cdd:COG4783   121 RPDEAIAALEKALELDPDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
317-380 5.87e-12

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 62.02  E-value: 5.87e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 632982017   317 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 380
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 91-452 9.65e-12

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 69.34  E-value: 9.65e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   91 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCvRSDLGNLLKAlGRleeakacY 170
Cdd:PRK11447  281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKV-NR-------Y 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  171 LKAIEtQPNFAVAWSNLGcvfnaqgeiwLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 249
Cdd:PRK11447  352 WLLIQ-QGDAALKANNLA----------QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPgNTN 420

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  250 VVHGnLACVYYEQG-------LIDL------AIDTYRRAIELqphfpDAYCNLANALKEKGNVAEAEECYNTALRLCPTH 316
Cdd:PRK11447  421 AVRG-LANLYRQQSpekalafIASLsasqrrSIDDIERSLQN-----DRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------------------EFAAAHSN--------------------- 356
Cdd:PRK11447  495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPndpeqvyayglylsgsdrdRAALAHLNtlpraqwnsniqelaqrlqsd 574

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  357 ----LASVLQQQGKLQEA--LMHYKEA-IRISPTFADAYSNMGntlkemqDVQGALQCYTRAIQINPAFADAHSNLASIH 429
Cdd:PRK11447  575 qvleTANRLRDSGKEAEAeaLLRQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARLGLIEVD 647

                         410       420
                  ....*....|....*....|...
gi 632982017  430 KDSGNIPEAiasyRTALKLKPDF 452
Cdd:PRK11447  648 IAQGDLAAA----RAQLAKLPAT 666
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 13-383 1.28e-11

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 68.96  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   13 GLAELAHREyqaGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGN----- 87
Cdd:PRK11447  390 GLGDVAMAR---KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNdrlaq 466

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   88 ---VYKERGQLQEAIEHYRHALRLKPDfiDGYIN--LAAALVAAGDMEGAVQAYVSALQYNPdlycvrsdlgnllkalGR 162
Cdd:PRK11447  467 qaeALENQGKWAQAAELQRQRLALDPG--SVWLTyrLAQDLRQAGQRSQADALMRRLAQQKP----------------ND 528

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  163 LEE--AKACYLKAIEtQPNFAVAwsNLGCVFNAQgeiWLA-IHHFEKAVTLDpNFLDAYINLGNVLKEArifdrAVAAYL 239
Cdd:PRK11447  529 PEQvyAYGLYLSGSD-RDRAALA--HLNTLPRAQ---WNSnIQELAQRLQSD-QVLETANRLRDSGKEA-----EAEALL 596

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  240 RALSLSPNHAVVhgnLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEEcyntALRLCPTHA-D 318
Cdd:PRK11447  597 RQQPPSTRIDLT---LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA----QLAKLPATAnD 669

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017  319 SLN---NLANIKREQGNIEEAVRLYR------KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPT 383
Cdd:PRK11447  670 SLNtqrRVALAWAALGDTAAAQRTFNrlipqaKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMvasGITPT 746
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 164-454 1.82e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.09  E-value: 1.82e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   164 EEAKACYLKAI---ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 240
Cdd:TIGR00990  311 EEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   241 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSL 320
Cdd:TIGR00990  391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY 470

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   321 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE-------AIRISPTFADAYSNMGN 393
Cdd:TIGR00990  471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEaenlcekALIIDPECDIAVATMAQ 550

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 632982017   394 TLKEMQDVQGALQCYTRAiqinpafadahsnlASIHKDSGNIPEAIA---SYRTALKLKPDFPD 454
Cdd:TIGR00990  551 LLLQQGDVDEALKLFERA--------------AELARTEGELVQAISyaeATRTQIQVQEDYPV 600
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 216-381 4.51e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 65.34  E-value: 4.51e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  216 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALK 294
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPdGGYEKYLYLGQLSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  295 EKgnvaEAEECYNTALRLCPTHADSLNNLAniKREQGNIEEAVR-----------LY------------------RKALE 345
Cdd:cd24142    81 GE----EALQYYEKGIEILEEELQALQAAS--AEAEEEAEELKRklssalcalaeIYmtdlcdepdaeqrceeliTKALE 154

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 632982017  346 VFPEFAAAHSNLASVLQQQGKLQEAlmhyKEAIRIS 381
Cdd:cd24142   155 LDPTNPEALQTLASLRISQQRPDEA----KEALRRS 186
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 318-510 5.36e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 64.96  E-value: 5.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  318 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGntlk 396
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLG---- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  397 emQDVQG--ALQCYTRAIQI--------NPAFADAHSNLASIHKDsgnIPEAIAS----YRT------------------ 444
Cdd:cd24142    77 --QLSGGeeALQYYEKGIEIleeelqalQAASAEAEEEAEELKRK---LSSALCAlaeiYMTdlcdepdaeqrceelitk 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017  445 ALKLKPDFPDAYCNLAHcLQIV-CDWTDYDERMKKLVSIVSDQLEKNRLPSVHPHHSMLYPLSHAFR 510
Cdd:cd24142   152 ALELDPTNPEALQTLAS-LRISqQRPDEAKEALRRSLELWKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 259-353 7.09e-11

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 60.39  E-value: 7.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  259 YYEQGLIDLAIDTYRRAIELQP---HFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTH---ADSLNNLANIKREQGN 332
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82

                          90       100
                  ....*....|....*....|.
gi 632982017  333 IEEAVRLYRKALEVFPEFAAA 353
Cdd:COG1729    83 YDKARATLEELIKKYPDSEAA 103
TPR_12 pfam13424
Tetratricopeptide repeat;
285-349 9.86e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 58.55  E-value: 9.86e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 632982017   285 AYCNLANALKEKGNVAEAEECYNTALRLC-----PTH---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 349
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-168 4.15e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 4.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    7 NVSDSTGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMLAEAYSNLG 86
Cdd:COG0457    72 DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   87 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 166
Cdd:COG0457   152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231


                  ..
gi 632982017  167 KA 168
Cdd:COG0457   232 AL 233
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 71-144 7.30e-10

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 60.64  E-value: 7.30e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 632982017   71 AIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 144
Cdd:NF033920  182 ATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 22-371 1.71e-09

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 61.86  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   22 YQAGDFEAAERHC---MQLWRQ--EPDNTGVLLL---LSSIHFQ------CRRLDRSA-------------HFSTLAikq 74
Cdd:NF040586  403 YLRGDYESARDLAeraLERWRErlGPDDRQTLRLrfhLANALRSlgryeeARELDEDTlerqrrvlglgedHPHTLM--- 479

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   75 npmlaeAYSNLGNVYKERGQLQEAIEHYRHALR-----LKPDfiDGYI-----NLAAALVAAGDmegavqaYVSALQYNP 144
Cdd:NF040586  480 ------TAGGLGADLRALGRFREALELDEETLErhrrvFGED--HPRTlraanNLAVSLRLLGD-------YREALELDR 544

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  145 DLYCVRSDLGNllkalgrleeakacylkaiETQPNFAVAWSNLGCVFNAQGEiwlaihhFEKAVTLdpnfldayinlgnv 224
Cdd:NF040586  545 EVLRRRRRVLG-------------------PDHPRTLLSANNLARDLRELGR-------YAEALDL-------------- 584

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  225 LKEARifdravaAYLRALSLSPNHAVVHG---NLA-----CVYYEQGLiDLAIDTYRRAIELQ-PHFPD---AYCNLANA 292
Cdd:NF040586  585 LEEAL-------ERYREVLGGPDHPDTLRaakSLAvalrrAGRLEEAL-ELAEDTYERYRRRFgPDHPDtlaAALSLAND 656

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  293 LKEKGN----VAEAEECYNT-ALRLCPTHADSL---NNLANIKREQGNIEEAVRLYRKALEVFPE----------FAAAh 354
Cdd:NF040586  657 LRALGDadeaRELAREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAEAALEGLRErlgpdhpytlAAAV- 735

                         410
                  ....*....|....*..
gi 632982017  355 sNLASVLQQQGKLQEAL 371
Cdd:NF040586  736 -NLANDLAALGDLDAAL 751
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 292-382 3.73e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 55.38  E-value: 3.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  292 ALKEKGNVAEAEECYNTALRLCPTH---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQG 365
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81

                          90
                  ....*....|....*..
gi 632982017  366 KLQEALMHYKEAIRISP 382
Cdd:COG1729    82 DYDKARATLEELIKKYP 98
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 193-371 9.77e-09

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 58.48  E-value: 9.77e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   193 AQGEIWLAIHHFEKAVTLDP--NFLD---AYINLG--NVLKEARifDRAVAAYLRALSLSPNHAVVHGN------LACVY 259
Cdd:pfam17874   13 SKGDAERALELAEQALALLPedDLLArglATFVLGeaYLCLGDL--DAALQAMREAEALARRADSPHVTlwallqQGEIL 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   260 YEQGLIDLAIDTYRRAIELQP-----HFP---DAYCNLANALKEKGNVAEAEECYNTALRLC---PTHA--DSLNNLANI 326
Cdd:pfam17874   91 RAQGRLHQALETYQQALQLARdhglqHLPlhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGrqwEPDAavDAYVLLARI 170

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 632982017   327 KREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASV----LQQQGKLQEAL 371
Cdd:pfam17874  171 ALAQGELEEALTLLRRAELLarqSFFHVDWLANAERVrvrlWLARGDLRAAV 222
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 404-463 1.03e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 1.03e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  404 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 463
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL 61
TPR_1 pfam00515
Tetratricopeptide repeat;
79-112 1.45e-08

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 51.27  E-value: 1.45e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017    79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 112
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 329-413 1.60e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 53.46  E-value: 1.60e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  329 EQGNIEEAVRLYRKALEVFP--EFAA-AHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQ 402
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPnsPLAPdALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYD 84

                          90
                  ....*....|.
gi 632982017  403 GALQCYTRAIQ 413
Cdd:COG1729    85 KARATLEELIK 95
TPR_12 pfam13424
Tetratricopeptide repeat;
349-417 1.73e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.39  E-value: 1.73e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017   349 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 417
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_11 pfam13414
TPR repeat;
86-127 2.25e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 50.93  E-value: 2.25e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 632982017    86 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 127
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 14-314 2.29e-08

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 57.23  E-value: 2.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   14 LAELAhreYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC----------RRLDRSAHFSTLAIKQnpMLAEAYS 83
Cdd:COG3071    91 RAELL---LDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLgdweellellPALRKHKALSAEEAQA--LERRAYL 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   84 NLgnvYKERGQLQEAIEHYRHAL----RLKPDFIDGYinlAAALVAAGDMEGAVQAYVSALQYNPDLycvrsdlgNLLKA 159
Cdd:COG3071   166 GL---LRQAARDAEALKALWKALpraeRRDPELAAAY---ARALIALGDHDEAERLLREALKRQWDP--------RLVRL 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  160 LGRLEEAKAcyLKAIetqpnfavawsnlgcvfnAQGEIWLAIHhfekavtldpnfldayinlgnvlkearifdravaayl 239
Cdd:COG3071   232 YGRLQGGDP--AKQL------------------KRAEKWLKKH------------------------------------- 254

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017  240 ralslsPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHfPDAYCNLANALKEKGNVAEAEECYNTALRLCP 314
Cdd:COG3071   255 ------PNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
TPR_11 pfam13414
TPR repeat;
258-297 2.39e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 50.93  E-value: 2.39e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 632982017   258 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 297
Cdd:pfam13414    3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 79-112 5.76e-08

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 49.37  E-value: 5.76e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 632982017     79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 112
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 256-348 8.45e-08

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 54.48  E-value: 8.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  256 ACVYYEQ-GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 334
Cdd:NF033920  162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241

                          90
                  ....*....|....
gi 632982017  335 EAVRLYRKALEVFP 348
Cdd:NF033920  242 QARAAAECALALAP 255
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 322-382 1.91e-07

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 49.26  E-value: 1.91e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 632982017   322 NLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 382
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_11 pfam13414
TPR repeat;
324-365 2.69e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.85  E-value: 2.69e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 632982017   324 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 365
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
363-399 4.52e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.08  E-value: 4.52e-07
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 632982017   363 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 399
Cdd:pfam13414    6 EQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
428-461 4.79e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.08  E-value: 4.79e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017   428 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 461
Cdd:pfam13414    3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 79-111 6.14e-07

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 46.75  E-value: 6.14e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017    79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 111
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 200-454 6.30e-07

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 53.93  E-value: 6.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  200 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-----------------AVVHGNLAcvyYEQ 262
Cdd:PRK11447  288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSsnrdkwesllkvnrywlLIQQGDAA---LKA 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  263 GLIDLAIDTYRRAIELQPHfpDAYC--NLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGnieeavrly 340
Cdd:PRK11447  365 NNLAQAERLYQQARQVDNT--DSYAvlGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS--------- 433

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  341 rkalevfPEFAAAHSNLASVLQQQ--GKLQEALMHykeairisptfaDAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 418
Cdd:PRK11447  434 -------PEKALAFIASLSASQRRsiDDIERSLQN------------DRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 632982017  419 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 454
Cdd:PRK11447  495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 363-455 6.66e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.83  E-value: 6.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  363 QQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIP 436
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYD 84

                          90
                  ....*....|....*....
gi 632982017  437 EAIASYRTALKLKPDFPDA 455
Cdd:COG1729    85 KARATLEELIKKYPDSEAA 103
TPR_12 pfam13424
Tetratricopeptide repeat;
78-141 8.19e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.77  E-value: 8.19e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 632982017    78 LAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 141
Cdd:pfam13424    2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 91-183 9.83e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.45  E-value: 9.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   91 ERGQLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-------LYcvrsDLGNLLKAL 160
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkapdaLL----KLGLSYLEL 80

                          90       100
                  ....*....|....*....|...
gi 632982017  161 GRLEEAKACYLKAIETQPNFAVA 183
Cdd:COG1729    81 GDYDKARATLEELIKKYPDSEAA 103
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 18-278 1.19e-06

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 51.93  E-value: 1.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    18 AHREYQAGDFEAAERHCMQ-LWRQEPDNTGVLLLLSSIH---FQCR-RLDRS-AHFS---TLAIKQNPMLAEAYS--NLG 86
Cdd:pfam17874    8 AQLAISKGDAERALELAEQaLALLPEDDLLARGLATFVLgeaYLCLgDLDAAlQAMReaeALARRADSPHVTLWAllQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    87 NVYKERGQLQEAIEHYRHALRLKPD------FIDG--YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 158
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDhglqhlPLHGflLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPDAAVDAYVLL 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   159 -----ALGRLEEAKAcYLKAIE---TQPNFAVAWsnLGCVFNAQGEIWLA----------IHHFEKAVTLDPNFLDA-YI 219
Cdd:pfam17874  168 arialAQGELEEALT-LLRRAEllaRQSFFHVDW--LANAERVRVRLWLArgdlraavrwLRAAEPPSDADNHFLEReLR 244

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017   220 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN-----LACVYYEQGLIDLAIDTYRRAIEL 278
Cdd:pfam17874  245 NLARVLLALGRFDDALSLLERLQNLAeQLGRVRSLIenlilQALALLALGRPDEALQALLDALSL 309
TPR_1 pfam00515
Tetratricopeptide repeat;
283-316 1.49e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.49  E-value: 1.49e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017   283 PDAYCNLANALKEKGNVAEAEECYNTALRLCPTH 316
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 297-396 2.04e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 48.90  E-value: 2.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  297 GNVAEAEECYNTALRLCPTHAD---SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-------QQQGK 366
Cdd:PRK02603   49 GEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYhkrgekaEEAGD 128

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 632982017  367 LQEALMHY-------KEAIRISPtfaDAYSNMGNTLK 396
Cdd:PRK02603  129 QDEAEALFdkaaeywKQAIRLAP---NNYIEAQNWLK 162
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 200-416 2.25e-06

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 51.35  E-value: 2.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  200 AIHHFEKAVTLDPNFLDAYINLGN-------------------------------VLKE-------ARIFDRAVAAYLRa 241
Cdd:PRK11788   54 AIDLFIEMLKVDPETVELHLALGNlfrrrgevdrairihqnllsrpdltreqrllALQElgqdylkAGLLDRAEELFLQ- 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  242 LSLSPNHAVVhgnlAcvyyEQGLIDL---------AIDTYRRAIELQP--------HFpdaYCNLANALKEKGNVAEAEE 304
Cdd:PRK11788  133 LVDEGDFAEG----A----LQQLLEIyqqekdwqkAIDVAERLEKLGGdslrveiaHF---YCELAQQALARGDLDAARA 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  305 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQQQGKLQEALMHYKEAIRISPt 383
Cdd:PRK11788  202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSeVLPKLMECYQALGDEAEGLEFLRRALEEYP- 280

                         250       260       270
                  ....*....|....*....|....*....|...
gi 632982017  384 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 416
Cdd:PRK11788  281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 283-316 2.93e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 44.74  E-value: 2.93e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 632982017    283 PDAYCNLANALKEKGNVAEAEECYNTALRLCPTH 316
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
82-180 3.51e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 49.50  E-value: 3.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   82 YSNLGNVYKERGQLQEAIEHYRHAL-RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYcvRSD----LGNL 156
Cdd:COG4700    92 RVRLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFK--SSDahllYARA 169

                          90       100
                  ....*....|....*....|....
gi 632982017  157 LKALGRLEEAKACYLKAIETQPNF 180
Cdd:COG4700   170 LEALGDLEAAEAELEALARRYSGP 193
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 24-318 3.56e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.07  E-value: 3.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   24 AGDFEAAERHCMQLWRQEpdntgvllllssihfqcRRLDRSAHFSTLAikqnpmlaeAYSNLGNVYKERGQLQEAIEHYR 103
Cdd:NF040586  533 LGDYREALELDREVLRRR-----------------RRVLGPDHPRTLL---------SANNLARDLRELGRYAEALDLLE 586

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  104 HALR------LKPDFIDGYI---NLAAALVAAGDMEGA-------VQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEA 166
Cdd:NF040586  587 EALEryrevlGGPDHPDTLRaakSLAVALRRAGRLEEAlelaedtYERYRRRFGpDHPDTLAAALSLANDLRALGDADEA 666

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  167 kacyLKAIETqpnfavawsnlgcvfnaqgeiwlAIHHFEKAVTLD-PNFLDAYINLGNVLK------EARIFDRAVAAYL 239
Cdd:NF040586  667 ----RELARE-----------------------VLDRYRRVLGEDhPFTLACRNNLAVLLRalgdpeEARELAEAALEGL 719

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  240 RAlSLSPNH------AVvhgNLACVYYEQGLIDLAID--TYRRAIELQ-------PHFPD---AYCNLANALKEKGNVAE 301
Cdd:NF040586  720 RE-RLGPDHpytlaaAV---NLANDLAALGDLDAALGeeALERLRRLLgedlragPDHPDtlaCAANLALDLRATGRTEE 795

                         330       340
                  ....*....|....*....|..
gi 632982017  302 AEECYNTAL-----RLCPTHAD 318
Cdd:NF040586  796 AEELRADTLarlrrVLGPDHPD 817
TPR_11 pfam13414
TPR repeat;
154-195 3.68e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 44.77  E-value: 3.68e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 632982017   154 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 195
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 227-498 3.72e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.07  E-value: 3.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  227 EARIFDRAVAAYLRALsLSPNHA---VVHGNLACVY-----YEQGLiDLAIDTYRRAIELQPhfPD------AYCNLANA 292
Cdd:NF040586  496 EALELDEETLERHRRV-FGEDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLG--PDhprtllSANNLARD 571

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  293 LKEKGNVAEA----EECYNTALRLC--PTHADSLN---NLANIKREQGNIEEAVRL----YRKALEVF----PEFAAAHS 355
Cdd:NF040586  572 LRELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEALELaedtYERYRRRFgpdhPDTLAAAL 651

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  356 NLASVLQQQGKLQEALMHYKEAIRISP---------TFAdAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAH--- 422
Cdd:NF040586  652 SLANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpyt 730

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  423 ----SNLASIHKDSGNIPEAIAS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYDERMKKLVSIVSDQ 486
Cdd:NF040586  731 laaaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLAR 806

                         330
                  ....*....|..
gi 632982017  487 LEKnRLPSVHPH 498
Cdd:NF040586  807 LRR-VLGPDHPD 817
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
288-400 4.37e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 49.11  E-value: 4.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  288 NLANALKEKGNVAEAEECYNTAL-RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQ 364
Cdd:COG4700    94 RLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEAL 173

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 632982017  365 GKLQEALMHYKEAIRISPTF------ADAYSNMGNT------LKEMQD 400
Cdd:COG4700   174 GDLEAAEAELEALARRYSGPearyryAKFLARQGRTaeakelLEEILD 221
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 13-379 4.79e-06

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 49.91  E-value: 4.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   13 GLAELAH--REYQAGDFEAAERHCMQLWRQEpDNTGVLLLLSSihfqcrrldRSAHfstlaikqnpmlaeaysnlgnvyk 90
Cdd:COG3071    16 LLAALLEglLALAEGRYARAEKLLSKAAEHS-EAPLLAYLLAA---------RAAQ------------------------ 61

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   91 ERGQLQEAIEHYRHALRLKPDFidgyiNLAAALVAA------GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 164
Cdd:COG3071    62 ALGDYERRDEYLAQALELAPEA-----ELAVLLTRAellldqGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWE 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  165 EAKAcYLKAIETQPNFAVAWSnlgcvfnAQGEIWLAIHHFEKAVTlDPNFLDAYINlgNVLKEARIFDRAVAAYLRALSl 244
Cdd:COG3071   137 ELLE-LLPALRKHKALSAEEA-------QALERRAYLGLLRQAAR-DAEALKALWK--ALPRAERRDPELAAAYARALI- 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  245 spnhavvhgnlacvyyEQGLIDLAIDTYRRAIELQPHfpDAycnLANALKE--KGNVAEAEECYNTALRLCPTHADSLNN 322
Cdd:COG3071   205 ----------------ALGDHDEAERLLREALKRQWD--PR---LVRLYGRlqGGDPAKQLKRAEKWLKKHPNDPDLLLA 263

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017  323 LANIKREQGNIEEAVRLYRKALEVFPEfAAAHSNLASVLQQQGKLQEALMHYKEAIR 379
Cdd:COG3071   264 LGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALA 319
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 153-413 4.84e-06

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 49.91  E-value: 4.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  153 LGNLLKAL-----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYinlgnVLKE 227
Cdd:COG3071    17 LAALLEGLlalaeGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAV-----LLTR 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  228 ARI------FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR--------AIELQPHFPDAYCNL---- 289
Cdd:COG3071    92 AELlldqgqAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPAlrkhkalsAEEAQALERRAYLGLlrqa 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  290 ----------------------------ANALKEKGNVAEAEECYNTALRLCPtHADSLNNLANIkrEQGNIEEAVRLYR 341
Cdd:COG3071   172 ardaealkalwkalpraerrdpelaaayARALIALGDHDEAERLLREALKRQW-DPRLVRLYGRL--QGGDPAKQLKRAE 248

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 632982017  342 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTfADAYSNMGNTLKEMQDVQGALQCYTRAIQ 413
Cdd:COG3071   249 KWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALA 319
COG3899 COG3899
Predicted ATPase [General function prediction only];
78-313 5.24e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 50.63  E-value: 5.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   78 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS 151
Cdd:COG3899   704 AARLLLRAARRALARGAYAEALRYLERALELLPPDPEEeyrlalLLELAEALYLAGRFEEAEALLERALAARALAALAAL 783

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  152 DLGNLLKA-----------LGRLEEAKACYLKAIE------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 214
Cdd:COG3899   784 RHGNPPASarayanlglllLGDYEEAYEFGELALAlaerlgDRRLEARALFNLGFILHWLGPLREALELLREALEAGLET 863

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  215 LDAyinLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 294
Cdd:COG3899   864 GDA---ALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAA 940

                         250
                  ....*....|....*....
gi 632982017  295 EKGNVAEAEECYNTALRLC 313
Cdd:COG3899   941 AAAALAAAAAAAALAAALA 959
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 288-348 6.77e-06

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 44.63  E-value: 6.77e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 632982017   288 NLANALKEKGNVAEAEECYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 348
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_1 pfam00515
Tetratricopeptide repeat;
385-416 7.49e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.56  E-value: 7.49e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 632982017   385 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 416
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
TPR_11 pfam13414
TPR repeat;
392-433 8.65e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 43.61  E-value: 8.65e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 632982017   392 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 433
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
COG3899 COG3899
Predicted ATPase [General function prediction only];
233-426 9.40e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 49.86  E-value: 9.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  233 RAVAAYLRALSLSPNHA-----VVHGNLAcvyyeqGLIDLAIDTYRRAielqphfpdaycnlANALKEKGNVAEAEECYN 307
Cdd:COG3899   670 RRIARALEARGPEPLEErlfelAHHLNRA------GERDRAARLLLRA--------------ARRALARGAYAEALRYLE 729

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  308 TALRLCP------THADSLNNLANIKREQGNIEEAVRLYRKALEV-------------FPEFAAAHSNLASVLqqQGKLQ 368
Cdd:COG3899   730 RALELLPpdpeeeYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaalrhgnPPASARAYANLGLLL--LGDYE 807

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 632982017  369 EALMHYKEAIRISPTF------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 426
Cdd:COG3899   808 EAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALL 871
COG3899 COG3899
Predicted ATPase [General function prediction only];
328-455 9.72e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 49.86  E-value: 9.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  328 REQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRI-------------SPTFADAY 388
Cdd:COG3899   716 LARGAYAEALRYLERALELLPPDpeeeyrLALLLELAEALYLAGRFEEAEALLERALAAralaalaalrhgnPPASARAY 795

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 632982017  389 SNMGNTLkeMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 455
Cdd:COG3899   796 ANLGLLL--LGDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDA 866
TPR_19 pfam14559
Tetratricopeptide repeat;
126-185 1.03e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 44.11  E-value: 1.03e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   126 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 185
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 74-145 1.27e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.37  E-value: 1.27e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017   74 QNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI---DGYINLAAALVAAGDMEGAVQAYVSALQYNPD 145
Cdd:COG1729    25 NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIKKYPD 99
TPR_1 pfam00515
Tetratricopeptide repeat;
181-214 1.30e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.79  E-value: 1.30e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017   181 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 214
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
317-350 1.31e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.79  E-value: 1.31e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017   317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 350
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 194-285 1.36e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.37  E-value: 1.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  194 QGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV---HGNLACVYYEQGLIDL 267
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDK 85

                          90
                  ....*....|....*...
gi 632982017  268 AIDTYRRAIELQPHFPDA 285
Cdd:COG1729    86 ARATLEELIKKYPDSEAA 103
TPR_12 pfam13424
Tetratricopeptide repeat;
217-278 1.61e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.92  E-value: 1.61e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   217 AYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 278
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 317-350 1.66e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.43  E-value: 1.66e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 632982017    317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 350
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_10 pfam13374
Tetratricopeptide repeat;
317-346 1.68e-05

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 42.87  E-value: 1.68e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 632982017   317 ADSLNNLANIKREQGNIEEAVRLYRKALEV 346
Cdd:pfam13374    2 ASSLNNLANALRAQGRYDEAEELLEEALAI 31
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 283-315 1.84e-05

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 42.51  E-value: 1.84e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017   283 PDAYCNLANALKEKGNVAEAEECYNTALRLCPT 315
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 254-317 2.03e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 43.48  E-value: 2.03e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017   254 NLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGNVAEAEECYNTALRLCPTHA 317
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFPESPDaaaALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_1 pfam00515
Tetratricopeptide repeat;
351-384 2.23e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.02  E-value: 2.23e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017   351 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 384
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 399-492 2.37e-05

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 48.37  E-value: 2.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  399 QDVQGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLqivCDWTDYDERMKK 478
Cdd:PRK09782  590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL---WDSGDIAQSREM 665

                          90
                  ....*....|....
gi 632982017  479 LVSIVSDQLEKNRL 492
Cdd:PRK09782  666 LERAHKGLPDDPAL 679
TPR_1 pfam00515
Tetratricopeptide repeat;
249-282 2.50e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.02  E-value: 2.50e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017   249 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 282
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_8 pfam13181
Tetratricopeptide repeat;
79-111 2.52e-05

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 42.00  E-value: 2.52e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017    79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 111
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 93-226 2.72e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.82  E-value: 2.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   93 GQLQEAIEHYRHALRLKPDFID-GYI--NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAc 169
Cdd:PRK02603   49 GEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG- 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017  170 ylkaietQPNFAVAWsnlgcvFNAQGEIWlaihhfEKAVTLDPNfldAYINLGNVLK 226
Cdd:PRK02603  128 -------DQDEAEAL------FDKAAEYW------KQAIRLAPN---NYIEAQNWLK 162
TPR_12 pfam13424
Tetratricopeptide repeat;
145-213 2.84e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 2.84e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017   145 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 213
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 89-278 3.22e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 47.24  E-value: 3.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   89 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD------LYcvrsdLGNLLKAlgr 162
Cdd:cd24142    10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggyekyLY-----LGQLSGG--- 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  163 lEEAKACYLKAIE-------TQPNFAVAWSNLGCVFNAQ--------GEIWLAIHHFEKavtldpnflDAyinlgnvlkE 227
Cdd:cd24142    82 -EEALQYYEKGIEileeelqALQAASAEAEEEAEELKRKlssalcalAEIYMTDLCDEP---------DA---------E 142

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 632982017  228 ARifdraVAAYL-RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 278
Cdd:cd24142   143 QR-----CEELItKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 14-179 3.44e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 47.21  E-value: 3.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   14 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLssihfQCRRLDRSAHFSTL--AIKQNPMLAEAYSNLGNVYKE 91
Cdd:COG3071   196 AAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYG-----RLQGGDPAKQLKRAekWLKKHPNDPDLLLALGRLCLR 270

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   92 RGQLQEAIEHYRHALRLKPDfidgyinlaaalvaagdmegaVQAYVSalqynpdlycvrsdLGNLLKALGRLEEAKACYL 171
Cdd:COG3071   271 NQLWGKAREYLEAALALRPS---------------------AEAYAE--------------LARLLEQLGDPEEAAEHYR 315


                  ....*...
gi 632982017  172 KAIETQPN 179
Cdd:COG3071   316 KALALALG 323
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 249-282 3.90e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.66  E-value: 3.90e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 632982017    249 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 282
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 181-214 4.02e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 4.02e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 632982017    181 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 214
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
14-111 4.45e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 4.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    14 LAELAHREYQAGDFEAAERH---CMQLWRQEPDntgvllllssihfqcrrldrsahfstlaiKQNPMLAEAYSNLGNVYK 90
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELlekALEIARRLLG-----------------------------PDHPLTATTLLNLGRLYL 56

                           90       100
                   ....*....|....*....|.
gi 632982017    91 ERGQLQEAIEHYRHALRLKPD 111
Cdd:pfam13424   57 ELGRYEEALELLERALALAEK 77
TPR_17 pfam13431
Tetratricopeptide repeat;
271-304 4.66e-05

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 41.38  E-value: 4.66e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017   271 TYRRAIELQPHFPDAYCNLANALKEKGNVAEAEE 304
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 351-384 4.75e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 4.75e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 632982017    351 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 384
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
170-345 4.81e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 46.03  E-value: 4.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  170 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAihhfEKAVTLDPNFlDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH- 248
Cdd:COG4700    49 VLPELRNSRDARRVQRAARNALDPGRELREL----EKALEFADTV-QNRVRLADALLELGRYDEAIELYEEALTGIFADd 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  249 -AVVHGnLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALKEKGNVAEAEECYNTALRLCPtHADSLNNLAN 325
Cdd:COG4700   124 pHILLG-LAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEALGDLEAAEAELEALARRYS-GPEARYRYAK 201

                         170       180
                  ....*....|....*....|
gi 632982017  326 IKREQGNIEEAVRLYRKALE 345
Cdd:COG4700   202 FLARQGRTAEAKELLEEILD 221
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 385-418 4.89e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 4.89e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 632982017    385 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 418
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR COG0790
TPR repeat [General function prediction only];
216-379 5.27e-05

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 46.07  E-value: 5.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  216 DAYINLGNVLKEARI----FDRAVAAYLRALSLspNHAVVHGNLAcVYYEQGL-----IDLAIDTYRRAIELQphFPDAY 286
Cdd:COG0790    64 EAQYNLGLMYAEGRGvpkdYEKALEWFEKAAEQ--GDAEAQYNLG-LMYEEGLgvpqdYAKALEWYEKAAEQG--DADAQ 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  287 CNLANALKE----KGNVAEAEECYNTALRLcpTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVfpEFAAAHSNLA 358
Cdd:COG0790   139 YNLGLLYLNgegvPKDPAKAAEWYRKAAEQ--GDADAQYNLGVLYENgrgvPKDPAKALEWYRKAAEQ--GDADAQYNLG 214

                         170       180
                  ....*....|....*....|....*.
gi 632982017  359 sVLQQQGK-----LQEALMHYKEAIR 379
Cdd:COG0790   215 -RLYLNGEgvekdLEKALRWLRKAAE 239
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 12-140 6.91e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 6.91e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    12 TGLAELAHREyqaGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQcRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKE 91
Cdd:TIGR02917  774 TALAELYLAQ---KDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNIPAILDTLGWLLVE 849

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 632982017    92 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 140
Cdd:TIGR02917  850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 14-180 7.00e-05

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 46.34  E-value: 7.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   14 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRsahfstlAIKqnpmLAEAYSNLGnvykeRG 93
Cdd:PRK11788  110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQK-------AID----VAERLEKLG-----GD 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   94 QLQEAIEHYrhalrlkpdfidgYINLAAALVAAGDMEGAVQAYVSALQYNPDlyCVRS--DLGNLLKALGRLEEAKACYL 171
Cdd:PRK11788  174 SLRVEIAHF-------------YCELAQQALARGDLDAARALLKKALAADPQ--CVRAsiLLGDLALAQGDYAAAIEALE 238


                  ....*....
gi 632982017  172 KAIETQPNF 180
Cdd:PRK11788  239 RVEEQDPEY 247
TPR_19 pfam14559
Tetratricopeptide repeat;
93-145 7.19e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 41.80  E-value: 7.19e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 632982017    93 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 145
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPD 54
COG3899 COG3899
Predicted ATPase [General function prediction only];
14-387 7.42e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 47.16  E-value: 7.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   14 LAELAHREYQAGDFEAAERH---CMQLWRQEPDNTG---VLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------ 75
Cdd:COG3899   708 LLRAARRALARGAYAEALRYlerALELLPPDPEEEYrlaLLLELAEALYLAGRFEEAEALLERALAARalaalaalrhgn 787

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   76 -PMLAEAYSNLGNVYkeRGQLQEAIEHYRHALRLKPDFID------GYINLAAALVAAGDMEGAVQAYVSALQYnpDLYC 148
Cdd:COG3899   788 pPASARAYANLGLLL--LGDYEEAYEFGELALALAERLGDrrlearALFNLGFILHWLGPLREALELLREALEA--GLET 863

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  149 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSnLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYinlgnvlkEA 228
Cdd:COG3899   864 GDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAA-AAALAAAAAAAALAAAELARLAAAAAAAAALA--------LA 934

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  229 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR---AIELQPHFPDAYCNLANALKEKGNVAEAEEC 305
Cdd:COG3899   935 AAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAaaaAAAAAAALEAAAAALLALLAAAAAAAAAAAA 1014

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  306 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 385
Cdd:COG3899  1015 LAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAA 1094


                  ..
gi 632982017  386 DA 387
Cdd:COG3899  1095 AA 1096
TPR_1 pfam00515
Tetratricopeptide repeat;
419-452 7.44e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.87  E-value: 7.44e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017   419 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 452
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 254-381 8.11e-05

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 45.80  E-value: 8.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  254 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKgnvAEAEECYNTALRLCPTHADSLNNLANIKREQGNI 333
Cdd:cd24145   152 ELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHSLVLMN---NEAAELALHALRKPLSSTLIEASRLPQKSRDQLL 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 632982017  334 EEAVRLYRKALEVF---------PE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 381
Cdd:cd24145   229 EAALKWAQKALDVAksikpkdrdPEcdqaCALALYNLGVIAEMLGNLDEARKLYKEAISLA 289
TPR_7 pfam13176
Tetratricopeptide repeat;
81-111 8.18e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.60  E-value: 8.18e-05
                           10        20        30
                   ....*....|....*....|....*....|.
gi 632982017    81 AYSNLGNVYKERGQLQEAIEHYRHALRLKPD 111
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKD 31
SNAP pfam14938
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ...
 284-442 9.00e-05

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.


Pssm-ID: 405606 [Multi-domain]  Cd Length: 273  Bit Score: 45.64  E-value: 9.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   284 DAYCNLANALKEKGNVAEAEECYNTALRlCPTHADSLNNLAN--------IKReqGNIEEAVRLYRKALEVFpefaaahs 355
Cdd:pfam14938   28 DLYIQAANAYKLAKNWEEAGEAFEKAAE-CQLKLGSKDEAANayveaakcYKK--VDPEEAVRALEKAIEIY-------- 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   356 nlasvlQQQGKLQEALMHYKEAirisptfADAYSNmgntlkEMQDVQGALQCYTRA---IQINPAFADAHSNL---ASIH 429
Cdd:pfam14938   97 ------TEMGRFRRAAKHKKEI-------AELYEQ------ELGDLEKAIEAYEQAadwYEGEGASALANKCYlkvADLS 157

                          170
                   ....*....|...
gi 632982017   430 KDSGNIPEAIASY 442
Cdd:pfam14938  158 AELEDYPKAIEIY 170
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 266-420 1.21e-04

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 45.26  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  266 DLAIDTYRRAIELQ-----PHfpDA---YCNLANALKeKGNVAEAEECYNTALRL------CPTHADSLNNLANI-KREQ 330
Cdd:cd15832    49 EEAGDAFLKAAECQlkldsKH--DAanaYVEAAKCYK-KVDPQEAVNCLEKAIEIytemgrFRQAAKHLKEIAELyENEL 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  331 GNIEEAVRLYRKALEVFP-EFAAAHSN-----LASVLQQQGKLQEALMHYKEAIRISptfadaysnMGNTL-----KE-- 397
Cdd:cd15832   126 GDLDKAIEAYEQAADYYEgEGANSLANkcylkVADLAAQLEDYDKAIEIYEQVARSS---------LENNLlkysaKDyf 196

                         170       180       190
                  ....*....|....*....|....*....|..
gi 632982017  398 ---------MQDVQGALQCYTRAIQINPAFAD 420
Cdd:cd15832   197 lkaglchlaAGDVVAAQRALEKYAELDPSFAG 228
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 231-354 1.35e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 45.57  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  231 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGNVAEAEECYNTA 309
Cdd:PRK11788  196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPeYLSEVLPKLMECYQALGDEAEGLEFLRRA 275

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 632982017  310 LRLCPThADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 354
Cdd:PRK11788  276 LEEYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 419-452 1.38e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.12  E-value: 1.38e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 632982017    419 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 452
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_11 pfam13414
TPR repeat;
290-331 1.47e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 40.15  E-value: 1.47e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 632982017   290 ANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQG 331
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_17 pfam13431
Tetratricopeptide repeat;
305-338 1.99e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 39.45  E-value: 1.99e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017   305 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 338
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_10 pfam13374
Tetratricopeptide repeat;
78-108 2.17e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 39.79  E-value: 2.17e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 632982017    78 LAEAYSNLGNVYKERGQLQEAIEHYRHALRL 108
Cdd:pfam13374    1 TASSLNNLANALRAQGRYDEAEELLEEALAI 31
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 317-349 2.42e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.43  E-value: 2.42e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017   317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 349
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_19 pfam14559
Tetratricopeptide repeat;
364-428 2.74e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 39.87  E-value: 2.74e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017   364 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 428
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 220-280 2.77e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.01  E-value: 2.77e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 632982017   220 NLGNVLKEARIFDRAVAAYLRAL---SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 280
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_19 pfam14559
Tetratricopeptide repeat;
330-370 2.87e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 39.87  E-value: 2.87e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 632982017   330 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 370
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEA 41
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 71-278 3.25e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 44.59  E-value: 3.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    71 AIKQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAaalvaagdmegavqayvsALQYNpdlycvr 150
Cdd:TIGR00990  391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG------------------VTQYK------- 445

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   151 sdlgnllkaLGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 230
Cdd:TIGR00990  446 ---------EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 632982017   231 FDRAVAAYL-------RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 278
Cdd:TIGR00990  517 LFQWKQDFIeaenlceKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 200-280 3.34e-04

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 43.69  E-value: 3.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  200 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 279
Cdd:NF033920  175 ALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALA 254


                  .
gi 632982017  280 P 280
Cdd:NF033920  255 P 255
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 330-438 4.01e-04

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 43.84  E-value: 4.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   330 QGNIEEAVRLYRKALEvfpeFAAAHSN----------LASVLQQQGKLQEALMHYKEAIR--------ISPTFADAYSNM 391
Cdd:pfam17874   53 LGDLDAALQAMREAEA----LARRADSphvtlwallqQGEILRAQGRLHQALETYQQALQlardhglqHLPLHGFLLVGL 128

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 632982017   392 GNTLKEMQDVQGALQCYTRAIQI-----NPAFADAHSNLASIHKDSGNIPEA 438
Cdd:pfam17874  129 ADLLYEWNDLEEAEQHAQQGIQLgrqwePDAAVDAYVLLARIALAQGELEEA 180
TPR_1 pfam00515
Tetratricopeptide repeat;
153-180 4.24e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.56  E-value: 4.24e-04
                           10        20
                   ....*....|....*....|....*...
gi 632982017   153 LGNLLKALGRLEEAKACYLKAIETQPNF 180
Cdd:pfam00515    7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
428-463 5.68e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 5.68e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 632982017  428 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 463
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLL 36
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 331-448 6.20e-04

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 41.13  E-value: 6.20e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    331 GNIEEAVRLYRKAL-----EVFPEFAAAhsnlASVLQQQGKLQEALMHYKEAIrisptfADAYSNMGntlkemqDVQGAL 405
Cdd:smart01043   19 ADPEAALALLEAALalyrgPLLADVPDE----DWAEAERERLRELRLEALEAL------AEALLALG-------RHEEAL 81

                            90       100       110       120
                    ....*....|....*....|....*....|....*....|...
gi 632982017    406 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 448
Cdd:smart01043   82 ALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
254-381 6.60e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.56  E-value: 6.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  254 NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADS----LnnLANIKR 328
Cdd:COG4700    94 RLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSdahlL--YARALE 171

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 632982017  329 EQGNIEEAVRLYRKALEVFPeFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 381
Cdd:COG4700   172 ALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILDEA 223
TPR_8 pfam13181
Tetratricopeptide repeat;
284-314 7.25e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 37.76  E-value: 7.25e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 632982017   284 DAYCNLANALKEKGNVAEAEECYNTALRLCP 314
Cdd:pfam13181    2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32
TPR_11 pfam13414
TPR repeat;
222-263 7.28e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 7.28e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 632982017   222 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 263
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 419-451 7.33e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.89  E-value: 7.33e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017   419 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 451
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR-S pfam20308
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ...
 26-123 7.47e-04

Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.


Pssm-ID: 466458 [Multi-domain]  Cd Length: 105  Bit Score: 39.95  E-value: 7.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    26 DFEAAeRHCMQLWRQEPDNTGVLLLLSsihF----QCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVYKER--------G 93
Cdd:pfam20308    1 DYDAA-VELLEALLALPEDARAQEQLA---LalarLPGDRDEALDVLEDLIERLGEDPETLGLLGRIYKRLwlesaedrE 76

                           90       100       110
                   ....*....|....*....|....*....|
gi 632982017    94 QLQEAIEHYRHALRLKPDFIDGyINLAAAL 123
Cdd:pfam20308   77 ALDQAIEAYRKAFELDPDDYPG-INAATLL 105
TPR_8 pfam13181
Tetratricopeptide repeat;
153-179 8.08e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 37.76  E-value: 8.08e-04
                           10        20
                   ....*....|....*....|....*..
gi 632982017   153 LGNLLKALGRLEEAKACYLKAIETQPN 179
Cdd:pfam13181    7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 385-416 9.56e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.50  E-value: 9.56e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 632982017   385 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 416
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 23-175 9.57e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 9.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   23 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS-AHFSTlAIKQNPML-AEAYSNLgnvykerGQL---QE 97
Cdd:cd24142    12 DQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEArEVLLR-AIELDPDGgYEKYLYL-------GQLsggEE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   98 AIEHYR----------HALRLKPDFIDGYIN-----LAAALVAAG-----------DMEGAVQAYV-SALQYNPDLYCVR 150
Cdd:cd24142    84 ALQYYEkgieileeelQALQAASAEAEEEAEelkrkLSSALCALAeiymtdlcdepDAEQRCEELItKALELDPTNPEAL 163

                         170       180
                  ....*....|....*....|....*
gi 632982017  151 SDLGNLLKALGRLEEAKACYLKAIE 175
Cdd:cd24142   164 QTLASLRISQQRPDEAKEALRRSLE 188
TPR_17 pfam13431
Tetratricopeptide repeat;
339-371 9.80e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 37.52  E-value: 9.80e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017   339 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 371
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 81-210 1.06e-03

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 42.34  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   81 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAgdmegAVQAYVSALQYNPDLYCVRSDLGNLLKA- 159
Cdd:cd24145   149 FLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHSLVLMN-----NEAAELALHALRKPLSSTLIEASRLPQKs 223

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017  160 -LGRLEEAKACYLKAI-------------ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 210
Cdd:cd24145   224 rDQLLEAALKWAQKALdvaksikpkdrdpECDQACALALYNLGVIAEMLGNLDEARKLYKEAISL 288
TPR_1 pfam00515
Tetratricopeptide repeat;
216-248 1.13e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 1.13e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017   216 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 248
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_7 pfam13176
Tetratricopeptide repeat;
319-346 1.21e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 37.52  E-value: 1.21e-03
                           10        20
                   ....*....|....*....|....*...
gi 632982017   319 SLNNLANIKREQGNIEEAVRLYRKALEV 346
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALAL 28
TPR_19 pfam14559
Tetratricopeptide repeat;
297-358 1.26e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.33  E-value: 1.26e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 632982017   297 GNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 358
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 292-451 1.29e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 42.76  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  292 ALKEKGNVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEvfpefAAAHSNlasvlqQQGKLQEAL 371
Cdd:PRK11447  278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA-----LDPHSS------NRDKWESLL 346

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  372 M--HYKEAIRisptfadaysnMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 449
Cdd:PRK11447  347 KvnRYWLLIQ-----------QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415


                  ..
gi 632982017  450 PD 451
Cdd:PRK11447  416 PG 417
StaR_like cd05804
StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member ...
 110-270 1.42e-03

StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.


Pssm-ID: 100115 [Multi-domain]  Cd Length: 355  Bit Score: 42.27  E-value: 1.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  110 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDlycvRSD---------LGNLLKalGRLEEAKACYLKAIETQPNF 180
Cdd:cd05804     3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA----RATererahveaLSAWIA--GDLPKALALLEQLLDDYPRD 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  181 AVAWSNLGCVFNAQGEIWLAiHHFEKAVTL-DP-NFLDAYIN--LGNVLKEARIFDRAVAAYLRALSLSPN-----HAVV 251
Cdd:cd05804    77 LLALKLHLGAFGLGDFSGMR-DHVARVLPLwAPeNPDYWYLLgmLAFGLEEAGQYDRAEEAARRALELNPDdawavHAVA 155

                         170
                  ....*....|....*....
gi 632982017  252 HgnlacVYYEQGLIDLAID 270
Cdd:cd05804   156 H-----VLEMQGRFKEGIA 169
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 222-312 1.50e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 39.98  E-value: 1.50e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017    222 GNVLKEARIFD--RAVAAYLRALSLSpnhavVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNV 299
Cdd:smart01043   37 GPLLADVPDEDwaEAERERLRELRLE-----ALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRR 111

                            90
                    ....*....|...
gi 632982017    300 AEAEECYNTALRL 312
Cdd:smart01043  112 AEALRAYRRLRRL 124
TPR_19 pfam14559
Tetratricopeptide repeat;
400-456 1.53e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.95  E-value: 1.53e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017   400 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 456
Cdd:pfam14559    3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
TPR_17 pfam13431
Tetratricopeptide repeat;
373-406 1.67e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 36.75  E-value: 1.67e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 632982017   373 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQ 406
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_14 pfam13428
Tetratricopeptide repeat;
323-360 1.79e-03

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 37.02  E-value: 1.79e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 632982017   323 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 360
Cdd:pfam13428    7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 390-451 1.90e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.70  E-value: 1.90e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017   390 NMGNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 451
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
ST7 cd11557
Suppression of tumorigenicity 7; ST7 is a metazoan protein that behaves as a tumor suppressor ...
 269-416 1.94e-03

Suppression of tumorigenicity 7; ST7 is a metazoan protein that behaves as a tumor suppressor in human cancer cells. It appears to localize to the cytoplasm and plasma membrane, and may mediate tumor suppression by regulating genes that are involved in oncogenic pathways and/or maintain cellular structure. It has been suggested that the suppression of tumorigenicity is associated with a function in mediating the remodeling of the extracellular matrix. However, somatic mutations of ST7 have not been observed as being commonly associated with molecular pathogenesis in various human neoplasias.


Pssm-ID: 211407 [Multi-domain]  Cd Length: 458  Bit Score: 41.99  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  269 IDTYRRAIELQPHFPDAYCNLANalKEKGNVAEAEECYNTALRLC------------------PTHADSLNNLANIK--- 327
Cdd:cd11557   142 IKAAHEALELNPECATALILLAE--EEAQTILEAEKLLKQALKAAeanyrksqqlqhqdpqheAVHRRDTNVLVYIKrrl 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  328 ----REQGNIEEAVRLYRKALEVFPEFAAA--HSNLASVL---QQQGKLQEALMHYKEA-----IRISPTFA-------- 385
Cdd:cd11557   220 amcaRKLGRLKEAVKMMRDLMKEFPLLSVLniHENLIEALlelQAYADVQAVLAKYDDIslpksATICYTAAllkarava 299

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 632982017  386 -----DAYSNMGNTLKEMQdvqgALQCYTRAIQINP 416
Cdd:cd11557   300 dkfspEVASRRGLSTAEMN----AVEAIHRAVEFNP 331
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 24-153 1.94e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 42.21  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   24 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPMlAEAYSNLGNVYKERGQLQEAIEHYR 103
Cdd:PRK09782  555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR 633

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 632982017  104 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 153
Cdd:PRK09782  634 AALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 216-248 2.26e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 2.26e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 632982017    216 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 248
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 153-180 2.44e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 2.44e-03
                            10        20
                    ....*....|....*....|....*...
gi 632982017    153 LGNLLKALGRLEEAKACYLKAIETQPNF 180
Cdd:smart00028    7 LGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 193-297 2.67e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 40.04  E-value: 2.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  193 AQGEIWLAIHHFEKAVTLDPNFLD-AYI--NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG------ 263
Cdd:PRK02603   47 ADGEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGekaeea 126

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 632982017  264 --------LIDLAIDTYRRAIELqphFPDAYCNLANALKEKG 297
Cdd:PRK02603  127 gdqdeaeaLFDKAAEYWKQAIRL---APNNYIEAQNWLKTTG 165
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 122-213 3.19e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 3.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  122 ALVAAGDMEGAVQAYVSALQYNPD-------LYcvrsDLGNLLKALGRLEEAKACYLKAIETQPN---FAVAWSNLGCVF 191
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNsplapdaLY----WLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSY 77

                          90       100
                  ....*....|....*....|..
gi 632982017  192 NAQGEIWLAIHHFEKAVTLDPN 213
Cdd:COG1729    78 LELGDYDKARATLEELIKKYPD 99
TPR_8 pfam13181
Tetratricopeptide repeat;
317-349 3.23e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.22  E-value: 3.23e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017   317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 349
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_17 pfam13431
Tetratricopeptide repeat;
169-201 3.39e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.98  E-value: 3.39e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017   169 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 201
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
TPR_11 pfam13414
TPR repeat;
188-227 3.81e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 36.30  E-value: 3.81e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 632982017   188 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 227
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
317-447 3.97e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 40.25  E-value: 3.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  317 ADSLNN---LANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN 390
Cdd:COG4700    86 ADTVQNrvrLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLL 165

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 632982017  391 MGNTLKEMQDVQGALQCYTRAIQINPaFADAHSNLASIHKDSGNIPEAIASYRTALK 447
Cdd:COG4700   166 YARALEALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILD 221
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 351-383 4.27e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.58  E-value: 4.27e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017   351 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 383
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 330-413 4.70e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 40.37  E-value: 4.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   330 QGNIEEAVRLYRKAL-----EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRisptFADAYSNMGNT------LKEM 398
Cdd:pfam17874   14 KGDAERALELAEQALallpeDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEA----LARRADSPHVTlwallqQGEI 89

                           90
                   ....*....|....*....
gi 632982017   399 QDVQG----ALQCYTRAIQ 413
Cdd:pfam17874   90 LRAQGrlhqALETYQQALQ 108
TPR_19 pfam14559
Tetratricopeptide repeat;
262-326 4.74e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.41  E-value: 4.74e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017   262 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVAEAEECYNTALRLCPTHADSLNNLANI 326
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 332-445 5.25e-03

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 39.87  E-value: 5.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  332 NIEEAVRLYRKAlevfpefaAAHSNLASVLQQQGK--LQEALMHYK-----EAirisptfADAYSNMGNTLKEMqDVQGA 404
Cdd:cd15832    27 KYEEAAELYEKA--------ANAFKLAKNWEEAGDafLKAAECQLKldskhDA-------ANAYVEAAKCYKKV-DPQEA 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 632982017  405 LQCYTRAIQI-------NPAfADAHSNLASIH-KDSGNIPEAIASYRTA 445
Cdd:cd15832    91 VNCLEKAIEIytemgrfRQA-AKHLKEIAELYeNELGDLDKAIEAYEQA 138
TPR_9 pfam13371
Tetratricopeptide repeat;
221-285 5.38e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 36.81  E-value: 5.38e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017   221 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 285
Cdd:pfam13371    1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 216-247 5.84e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.19  E-value: 5.84e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 632982017   216 DAYINLGNVLKEARIFDRAVAAYLRALSLSPN 247
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 397-464 6.91e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 6.91e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 632982017  397 EMQDVQGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD---FPDAYCNLAHCLQ 464
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYL 78
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 323-417 7.21e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 39.07  E-value: 7.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017  323 LANIKREQGNIEEAVRLYRKALE--VFPEFAA-AHSNLASVLQQQGKLQEALMHYKEAirISPTFADAYSN-MGNTLKEM 398
Cdd:COG2976    96 LAKAAVDAGDLDKAAAQLQWVLDnaKDPALKAlARLRLARVLLAQKKYDEALATLDAV--KPEAFAALYAElRGDILLAQ 173

                          90
                  ....*....|....*....
gi 632982017  399 QDVQGALQCYTRAIQINPA 417
Cdd:COG2976   174 GDKAEARAAYQKALAALPE 192
TPR_7 pfam13176
Tetratricopeptide repeat;
421-456 7.55e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 7.55e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 632982017   421 AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 456
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 249-281 8.50e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 8.50e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 632982017   249 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 281
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 85-178 8.50e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 38.68  E-value: 8.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 632982017   85 LGNVYKERGQLQEAIEHYRHALRLKPDfiDGY-----INLAAALVAAGDMEGAVQAY--VSALQYNPDLYCVRSDLgnlL 157
Cdd:COG2976    96 LAKAAVDAGDLDKAAAQLQWVLDNAKD--PALkalarLRLARVLLAQKKYDEALATLdaVKPEAFAALYAELRGDI---L 170

                          90       100
                  ....*....|....*....|.
gi 632982017  158 KALGRLEEAKACYLKAIETQP 178
Cdd:COG2976   171 LAQGDKAEARAAYQKALAALP 191
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 153-179 8.75e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 8.75e-03
                           10        20
                   ....*....|....*....|....*..
gi 632982017   153 LGNLLKALGRLEEAKACYLKAIETQPN 179
Cdd:pfam07719    7 LGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 84-145 8.99e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.77  E-value: 8.99e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 632982017    84 NLGNVYKERGQLQEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 145
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
TPR_19 pfam14559
Tetratricopeptide repeat;
231-286 9.17e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 35.64  E-value: 9.17e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 632982017   231 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 286
Cdd:pfam14559    4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
TPR_10 pfam13374
Tetratricopeptide repeat;
351-380 9.61e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 35.17  E-value: 9.61e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 632982017   351 AAAHSNLASVLQQQGKLQEALMHYKEAIRI 380
Cdd:pfam13374    2 ASSLNNLANALRAQGRYDEAEELLEEALAI 31
TPR_14 pfam13428
Tetratricopeptide repeat;
79-122 9.73e-03

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 35.09  E-value: 9.73e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 632982017    79 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 122
Cdd:pfam13428    1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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