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rnf17 ring finger protein 17 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103186507, updated on 11-Mar-2024

Summary

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Gene symbol
rnf17
Gene description
ring finger protein 17
See related
Ensembl:ENSCMIG00000007900
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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See rnf17 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704745.1 (66111190..66159672)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890198.1 (426713..475179, complement)

NW_024704745.1Genomic Context describing neighboring genes Neighboring gene ferredoxin 1 Neighboring gene rho GTPase-activating protein 20 Neighboring gene centromere protein J Neighboring gene poly (ADP-ribose) polymerase family, member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
RING finger protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704745.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    66111190..66159672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007905602.2 → XP_007903793.2  RING finger protein 17 isoform X1

    UniProtKB/TrEMBL
    A0A4W3HK19, V9K8C8
    Conserved Domains (4) summary
    smart00333
    Location:822 → 876
    TUDOR; Tudor domain
    COG1390
    Location:237 → 320
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    cl02573
    Location:1075 → 1120
    Tudor_SF; Tudor domain superfamily
    cl17238
    Location:13 → 68
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_007905603.2 → XP_007903794.2  RING finger protein 17 isoform X2

    UniProtKB/TrEMBL
    A0A4W3HMR5
    Conserved Domains (4) summary
    smart00333
    Location:822 → 876
    TUDOR; Tudor domain
    COG1390
    Location:237 → 320
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    cl02573
    Location:1075 → 1120
    Tudor_SF; Tudor domain superfamily
    cl17238
    Location:13 → 68
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. XM_007905604.2 → XP_007903795.2  RING finger protein 17 isoform X3

    UniProtKB/TrEMBL
    A0A4W3HK33
    Conserved Domains (4) summary
    smart00333
    Location:722 → 776
    TUDOR; Tudor domain
    COG1390
    Location:237 → 320
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    cl02573
    Location:975 → 1020
    Tudor_SF; Tudor domain superfamily
    cl17238
    Location:13 → 68
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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