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eif3ba eukaryotic translation initiation factor 3, subunit Ba [ Poecilia formosa (Amazon molly) ]

Gene ID: 103131887, updated on 11-Mar-2024

Summary

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Gene symbol
eif3ba
Gene description
eukaryotic translation initiation factor 3, subunit Ba
See related
Ensembl:ENSPFOG00000001449
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
eif3b
Orthologs
human zebrafish all
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Genomic context

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See eif3ba in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800805.1 (51951..70571)

NW_006800805.1Genomic Context describing neighboring genes Neighboring gene GRB2-related adapter protein-like Neighboring gene uncharacterized LOC107834951 Neighboring gene BRCA1-associated ATM activator 1 Neighboring gene uncharacterized LOC103131889

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800805.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of eukaryotic translation initiation factor 3 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 3 subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800805.1 Reference Poecilia_formosa-5.1.2

    Range
    51951..70571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007543627.2 → XP_007543689.1  eukaryotic translation initiation factor 3 subunit B

    UniProtKB/TrEMBL
    A0A087X6Z1
    Related
    ENSPFOP00000001544.2, ENSPFOT00000001547.2
    Conserved Domains (4) summary
    COG5354
    Location:175 → 672
    COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
    cd12278
    Location:63 → 131
    RRM_eIF3B; RNA recognition motif in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins
    sd00039
    Location:243 → 290
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:205 → 446
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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