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lama2 laminin, alpha 2 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103131316, updated on 11-Mar-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
See related
Ensembl:ENSPFOG00000017974
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
74
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799940.1 (2099636..2249470, complement)

NW_006799940.1Genomic Context describing neighboring genes Neighboring gene signal-induced proliferation-associated 1 like 1 Neighboring gene uncharacterized LOC103131122 Neighboring gene regulator of G protein signaling 6 Neighboring gene vesicular inhibitory amino acid transporter-like Neighboring gene protein tyrosine phosphatase receptor type K

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799940.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2
Names
laminin subunit alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799940.1 Reference Poecilia_formosa-5.1.2

    Range
    2099636..2249470 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016668171.1 → XP_016523657.1  laminin subunit alpha-2 isoform X6

    UniProtKB/TrEMBL
    A0A096M7M8
    Related
    ENSPFOP00000027419.1, ENSPFOT00000028777.1

  2. XM_007542962.2 → XP_007543024.1  laminin subunit alpha-2 isoform X4

    UniProtKB/TrEMBL
    A0A096M7M8
    Conserved Domains (11) summary
    smart00180
    Location:1045 → 1089
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:1306 → 1435
    LamB; Laminin B domain
    cd00055
    Location:903 → 946
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3038 → 3189
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:569 → 697
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1497 → 1543
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2871 → 2998
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:39 → 274
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:1629 → 1880
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2082 → 2203
    Laminin_II; Laminin Domain II
    pfam16043
    Location:1746 → 1933
    DUF4795; Domain of unknown function (DUF4795)

  3. XM_016668150.1 → XP_016523636.1  laminin subunit alpha-2 isoform X2

    UniProtKB/TrEMBL
    A0A096M7M8

  4. XM_016668157.1 → XP_016523643.1  laminin subunit alpha-2 isoform X3

    UniProtKB/TrEMBL
    A0A096M7M8

  5. XM_016668145.1 → XP_016523631.1  laminin subunit alpha-2 isoform X1

    UniProtKB/TrEMBL
    A0A096M7M8

  6. XM_016668177.1 → XP_016523663.1  laminin subunit alpha-2 isoform X7

    UniProtKB/TrEMBL
    A0A096M7M8

  7. XM_016668169.1 → XP_016523655.1  laminin subunit alpha-2 isoform X5

    UniProtKB/TrEMBL
    A0A096M7M8
Nucleotide Protein
Heading Accession and Version

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