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CD109 CD109 molecule [ Physeter catodon (sperm whale) ]

Gene ID: 102994770, updated on 10-Mar-2024

Summary

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Gene symbol
CD109
Gene description
CD109 molecule
See related
Ensembl:ENSPCTG00005022320
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See CD109 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 10 NC_041223.1 (84148586..84281767)
102 previous assembly ASM283717v2 (GCF_002837175.2) 10 NC_041223.1 (84148576..84281760)

Chromosome 10 - NC_041223.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 alpha 1 Neighboring gene solute carrier family 17 member 5 Neighboring gene low molecular weight phosphotyrosine protein phosphatase-like Neighboring gene uncharacterized LOC114487009

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD109 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041223.1 Reference ASM283717v5 Primary Assembly

    Range
    84148586..84281767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024132947.3 → XP_023988715.1  CD109 antigen

    UniProtKB/TrEMBL
    A0A2Y9TII6
    Related
    ENSPCTP00005031406.1, ENSPCTT00005034488.1
    Conserved Domains (4) summary
    cd02897
    Location:902 → 1189
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:688 → 777
    A2M; Alpha-2-macroglobulin family
    pfam07677
    Location:1306 → 1390
    A2M_recep; A-macroglobulin receptor
    cl19929
    Location:60 → 995
    A2M_N; MG2 domain
Nucleotide Protein
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Gene LinkOut

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