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GLB1 galactosidase beta 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102945910, updated on 10-Mar-2024

Summary

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Gene symbol
GLB1
Gene description
galactosidase beta 1
Locus tag
UY3_17432
See related
EnsemblRapid:ENSCMYG00015023035
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
20
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 2 NC_057850.1 (180180838..180247195)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 2 NC_051242.1 (180180853..180247195)

Chromosome 2 - NC_057850.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene transmembrane protein with metallophosphoesterase domain Neighboring gene zinc finger and SCAN domain-containing protein 29-like Neighboring gene C-C motif chemokine receptor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-galactosidase
Names
Beta-galactosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057850.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    180180838..180247195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037890203.2 → XP_037746131.1  beta-galactosidase isoform X3

    Conserved Domains (2) summary
    pfam01301
    Location:1 → 284
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:469 → 543
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  2. XM_027832838.3 → XP_027688639.2  beta-galactosidase isoform X2

    UniProtKB/TrEMBL
    M7ARL1
    Related
    ENSCMYP00015035208.1, ENSCMYT00015043351.1
    Conserved Domains (2) summary
    pfam01301
    Location:56 → 370
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:555 → 629
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  3. XM_037890205.2 → XP_037746133.1  beta-galactosidase isoform X3

    Conserved Domains (2) summary
    pfam01301
    Location:1 → 284
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:469 → 543
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  4. XM_037890202.2 → XP_037746130.1  beta-galactosidase isoform X3

    Conserved Domains (2) summary
    pfam01301
    Location:1 → 284
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:469 → 543
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  5. XM_037890204.2 → XP_037746132.1  beta-galactosidase isoform X3

    Conserved Domains (2) summary
    pfam01301
    Location:1 → 284
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:469 → 543
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  6. XM_043540715.1 → XP_043396650.1  beta-galactosidase isoform X1

    UniProtKB/TrEMBL
    M7ARL1
    Conserved Domains (1) summary
    PLN03059
    Location:72 → 626
    PLN03059; beta-galactosidase; Provisional

  7. XM_043540716.1 → XP_043396651.1  beta-galactosidase isoform X4

    Conserved Domains (1) summary
    PLN03059
    Location:72 → 391
    PLN03059; beta-galactosidase; Provisional
Nucleotide Protein
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