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Lamb1 laminin subunit beta 1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102917271, updated on 10-Mar-2024

Summary

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Gene symbol
Lamb1
Gene description
laminin subunit beta 1
See related
Ensembl:ENSPEMG00000023873
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Lamb1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
35
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 14 NC_056021.1 (39949037..40017205, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501457.1 (177847..247336)

Chromosome 14 - NC_056021.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 26 member 3 Neighboring gene uncharacterized LOC121822369 Neighboring gene dihydrolipoamide dehydrogenase Neighboring gene uncharacterized LOC121822370 Neighboring gene dynein light chain roadblock-type 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit beta-1
Names
laminin, beta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056021.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    39949037..40017205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042260752.1 → XP_042116686.1  laminin subunit beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0EAQ1
    Conserved Domains (6) summary
    smart00180
    Location:773 → 818
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    COG1196
    Location:1190 → 1778
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:457 → 508
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00053
    Location:821 → 869
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:36 → 269
    Laminin_N; Laminin N-terminal (Domain VI)
    cd22300
    Location:1714 → 1786
    cc_LAMB1_C; C-terminal coiled-coil domain found in laminin subunit beta-1 (LAMB1)

  2. XM_016007902.2 → XP_015863388.1  laminin subunit beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0EAQ1
    Related
    ENSPEMP00000028310.1
    Conserved Domains (6) summary
    smart00180
    Location:773 → 818
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    COG1196
    Location:1190 → 1778
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:457 → 508
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00053
    Location:821 → 869
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:36 → 269
    Laminin_N; Laminin N-terminal (Domain VI)
    cd22300
    Location:1714 → 1786
    cc_LAMB1_C; C-terminal coiled-coil domain found in laminin subunit beta-1 (LAMB1)

  3. XM_006989516.3 → XP_006989578.1  laminin subunit beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9M4Q0
    Related
    ENSPEMP00000028311.1
    Conserved Domains (7) summary
    smart00180
    Location:821 → 866
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:505 → 556
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00053
    Location:869 → 917
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:92 → 317
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam00261
    Location:1511 → 1749
    Tropomyosin; Tropomyosin
    pfam15704
    Location:1520 → 1736
    Mt_ATP_synt; Mitochondrial ATP synthase subunit
    cl15454
    Location:1686 → 1815
    HrpJ; HrpJ-like domain

  4. XM_016007903.2 → XP_015863389.1  laminin subunit beta-1 isoform X3

    UniProtKB/TrEMBL
    A0A6J0E8I2
    Conserved Domains (6) summary
    smart00180
    Location:458 → 503
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:551 → 596
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00053
    Location:506 → 554
    Laminin_EGF; Laminin EGF domain
    pfam00261
    Location:1148 → 1386
    Tropomyosin; Tropomyosin
    pfam15704
    Location:1157 → 1373
    Mt_ATP_synt; Mitochondrial ATP synthase subunit
    cl15454
    Location:1323 → 1452
    HrpJ; HrpJ-like domain
Nucleotide Protein
Heading Accession and Version

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