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dhx57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [ Neolamprologus brichardi ]

Gene ID: 102780155, updated on 10-Mar-2024

Summary

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Gene symbol
dhx57
Gene description
DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
See related
Ensembl:ENSNBRG00000000229
Gene type
protein coding
RefSeq status
MODEL
Organism
Neolamprologus brichardi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
Orthologs
human zebrafish all
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Genomic context

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See dhx57 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272002.1 (3033357..3044908)

NW_006272002.1Genomic Context describing neighboring genes Neighboring gene adenosylhomocysteinase like 2b Neighboring gene striatin interacting protein 2 Neighboring gene MORN repeat containing 2 Neighboring gene small lysine-rich protein 1 Neighboring gene dynamin-1-like protein Neighboring gene short transmembrane mitochondrial protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006272002 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative ATP-dependent RNA helicase DHX57

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NeoBri1.0 Primary Assembly

Genomic

  1. NW_006272002.1 Reference NeoBri1.0 Primary Assembly

    Range
    3033357..3044908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006780604.2 → XP_006780667.1  putative ATP-dependent RNA helicase DHX57 isoform X2

    UniProtKB/TrEMBL
    A0A3Q4FXJ7
    Related
    ENSNBRP00000000341.1, ENSNBRT00000000377.1
    Conserved Domains (8) summary
    smart00487
    Location:605 → 779
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:1094 → 1176
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:610 → 752
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd14317
    Location:210 → 247
    UBA_DHX57; UBA domain found in putative ATP-dependent RNA helicase DHX57 and similar proteins
    pfam00271
    Location:883 → 1019
    Helicase_C; Helicase conserved C-terminal domain
    pfam00642
    Location:331 → 351
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam05773
    Location:378 → 447
    RWD; RWD domain
    pfam07717
    Location:1215 → 1361
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

  2. XM_006780603.2 → XP_006780666.1  putative ATP-dependent RNA helicase DHX57 isoform X1

    UniProtKB/TrEMBL
    A0A3Q4FXJ7
    Conserved Domains (8) summary
    smart00487
    Location:618 → 792
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:1107 → 1189
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:623 → 765
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd14317
    Location:223 → 260
    UBA_DHX57; UBA domain found in putative ATP-dependent RNA helicase DHX57 and similar proteins
    pfam00271
    Location:896 → 1032
    Helicase_C; Helicase conserved C-terminal domain
    pfam00642
    Location:344 → 364
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam05773
    Location:285 → 460
    RWD; RWD domain
    pfam07717
    Location:1228 → 1374
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein
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