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LOC102611099 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [ Citrus sinensis (sweet orange) ]

Gene ID: 102611099, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102611099
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Locus tag
KPL70_018476
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102611099 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 6 NC_068561.1 (20765199..20777078, complement)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 6 NC_023051.1 (15513618..15525286, complement)

Chromosome 6 - NC_068561.1Genomic Context describing neighboring genes Neighboring gene mitochondrial fission protein ELM1 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP18-2 Neighboring gene WD repeat-containing protein LWD1-like Neighboring gene vacuolar protein sorting-associated protein 55 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Names
putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068561.1 Reference DVS_A1.0 Primary Assembly

    Range
    20765199..20777078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025099693.2 → XP_024955461.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X1

    UniProtKB/TrEMBL
    A0A067FSZ4
    Conserved Domains (3) summary
    COG3914
    Location:317 → 849
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]
    cl26002
    Location:52 → 467
    TPR_11; TPR repeat

  2. XM_025099694.2 → XP_024955462.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X1

    UniProtKB/TrEMBL
    A0A067FSZ4
    Conserved Domains (3) summary
    COG3914
    Location:317 → 849
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]
    cl26002
    Location:52 → 467
    TPR_11; TPR repeat

  3. XM_006481666.4 → XP_006481729.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X1

    UniProtKB/TrEMBL
    A0A067FSZ4
    Conserved Domains (3) summary
    COG3914
    Location:317 → 849
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]
    cl26002
    Location:52 → 467
    TPR_11; TPR repeat

  4. XM_025099695.2 → XP_024955463.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X2

    UniProtKB/TrEMBL
    A0A067FSZ4
    Conserved Domains (3) summary
    COG0457
    Location:44 → 318
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:184 → 716
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:201 → 229
    TPR; TPR repeat [structural motif]

RNA

  1. XR_008055661.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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